Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0409 ATGGATCTGATTTCGGGTCTGCCAGACGATGTGGCCATAGACTGTTTGGTTCGTGTTTCCTACGATCAGTTCCCCACCGTTGCGTCCGTTTGTAACAACTGGAAGACAGAGATTGAGACGCCGGAGTTTCGCCGTCGACGGAGGGACACAGGTCATATTCAGAAACTCACCGTGATGGTTCAATCGCGAGTCGATTCTGATAAACGCGTGAGTTCTTTGATGAAGGGTTCGGCCAACCCGATTTACCATTTGAGTGTATTCGAGGCGAATTCGGGTCAGTGGAACGAGTTGCCGCCGCCTCCGGGTTTCTCCGGCGGTTTACCCATGTTCTGTCAAATAGCGGGTGTCGGATACGACTTGGTTTTGATTGGCGGGTGGGACCCTAACTCGTGGAAGTCTTCGAATTCCGTGTTTATTTACAACTTCATGACTGCTAAATGGCGACGTGGGGCCGACATGCCGGGTGGGCCAAGGACGTTCTTCGCCTGCGCGTCTGATTCCGAGCGACTAGTCTACGTGGCCGGTGGGCACGACGATGAGAAGAATGCGTTGAGGTCGGCGTGGGCCTATGACGTGGCAAGAGATGAGTGGGTCGCACTTCCCGATATGGATAGAGAGAGGGACGAGTGCAAGGCCGTATTCCAACGTCAAAGCGGGAAGTTCCGGGTCGTTGGCGGTTACTGTACGAAGATGCAAGGGCGGTTTGAGAGAAGCACCGAAGCCTTTGATGTTGCCACGTGCAAGTGGGACCCGGTCGAGGATGAGTTCCTTGGATCTGCCACGTGTCCGAGGACATGCGTGGACGGTGGTGATGGAGGGAGAGTTTACATGTGCAGGGGTGGTGACGTGGTGGCATTAGAGAGTGACACGTGGCAAGCTGTGGCGAAACTGCCATGTGAGATCCGGGAAGTGGCGTACATGAGTTTGGGGAAGGAGGGGACGATGTTGGTGATTGGATCAAGTGGGTCTGCTGAACCATACATGGGCCTTGTATTGGACCTTAAGAGTCACTGTTGGAGGAAGTTGGAAAGCCGAATGGGCCATACGGGGCACGTCCAGTTAGGTTGTCTATTGGAGATTTAG 1083 0.542 MDLISGLPDDVAIDCLVRVSYDQFPTVASVCNNWKTEIETPEFRRRRRDTGHIQKLTVMVQSRVDSDKRVSSLMKGSANPIYHLSVFEANSGQWNELPPPPGFSGGLPMFCQIAGVGYDLVLIGGWDPNSWKSSNSVFIYNFMTAKWRRGADMPGGPRTFFACASDSERLVYVAGGHDDEKNALRSAWAYDVARDEWVALPDMDRERDECKAVFQRQSGKFRVVGGYCTKMQGRFERSTEAFDVATCKWDPVEDEFLGSATCPRTCVDGGDGGRVYMCRGGDVVALESDTWQAVAKLPCEIREVAYMSLGKEGTMLVIGSSGSAEPYMGLVLDLKSHCWRKLESRMGHTGHVQLGCLLEI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0409 360 SUPERFAMILY F-box domain 1 56 IPR036047 GO:0005515
Lele38g0409 360 PANTHER OS02G0208700 PROTEIN 2 360 IPR044595 GO:0080037|GO:2000762
Lele38g0409 360 SUPERFAMILY Kelch motif 79 346 IPR015915 GO:0005515
Lele38g0409 360 Gene3D - 65 353 IPR015915 GO:0005515
Lele38g0409 360 Pfam Kelch motif 114 154 IPR006652 GO:0005515
Lele38g0409 360 Pfam Kelch motif 170 203 IPR006652 GO:0005515
Lele38g0409 360 SMART kelc_smart 170 217 IPR006652 GO:0005515
Lele38g0409 360 SMART kelc_smart 119 167 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0409 Lele-ChrLele38 3279995 3281077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0409 7 200 Miscellaneous Gene Families AT4G33900 23.923 1.67e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g0507 44 3894414 3896126 Lele38g0409 38 3279995 3281077 CCT
Lele41g0846 41 18175023 18179842 Lele38g0409 38 3279995 3281077 CCT
Lele42g0836 42 21269331 21273794 Lele38g0409 38 3279995 3281077 CCT
Lele38g0409 38 3279995 3281077 Lele38g0409 38 3279995 3281077 ECH
Lele38g0409 38 3279995 3281077 Lele39g0986 39 18689473 18690558 hybridization
Lele38g0409 38 3279995 3281077 Lele40g0387 40 3123743 3124501 hybridization