Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0388 ATGGTCTTTCTACTAGGTACTACTTTCTTGCTTGTATTTGGGAACCTAAGTGTGTTGTGTTACAATCACAATAAATTGTTTGTTTGCAGCTTTCTTCTAACACTTTCTTGTTGCTTATTGGTATGTCAAGTTCTAAGGTTGATGATGAGAGAGAACTTGAGGGAATTTGTGGCAGGAGGGATAGGGGGTGTGGCTGGAGTGATCTCTGGTTATCCACTAGACACCCTCCGAATCCTCCAACAGAATTCAAACATGCCAACTTCTGTGATCAGATTAATAAAAAATGTGGTTTCCAAGGAAGGACCAGCTTCTCTCTACAGAGGCATGGCTGCACCTTTGGCTGCTATTACTTTTCAGAATGCTATGATTTTTCAAACCTATGCAGTTCTCTCAAGAGTCTTTGACTCATCAGTCTCAGCCAACAACCCTCCTTCCTACAACAGCGTTGCTCTAGCAGGATTCATAACTGGTGCTTTACAAAGCACGATTGTGTCCCCAGTAGAACTGGTCAAAATCCGGCTCCAGCTTCAGAGCAAGGGCCAATTAACAACAGAATCCTATAAAGGTCCTTTATCAATGACAAGGAAGATATGGAACAGAGAAGGTCTTAGAGGCATATTCCGAGGATTCGGCATCACCGTCCTCAGGGATGCGCCTGGTCATGGTGTATACTTCTGGACATATGAGTACATGAGGGAACAACTTCACCCAGGTTGTAGAGAAACTAGTCAAGAAAGATTGAGTACAATGTTAATAGCAGGAGGATTAGCTGGGGTAGTGAGTTGGATTGGCTGTTACCCTTTTGATGTTATAAAGACAAGACTACAGGCTCAAACACAATCATCACTGAGATACATAGGCATTATTGATTGCCTGGGAAAGACGGTCAGAGAAGAAGGACACAATGTTTTGTGGAGGGGTATAGGAACTACAGTGGGTAGAGCTTTTATAGTGAATGGTGCTGTGTTTGCTGCTTATGAAATTGCTATGAGAAGCCTGTCAGACAATAATGGAAGTAGTAGCACTAACAATCTAGGCGATCCATTCTTTTCTAGGAACACAAGACAATGA 1071 0.4258 MVFLLGTTFLLVFGNLSVLCYNHNKLFVCSFLLTLSCCLLVCQVLRLMMRENLREFVAGGIGGVAGVISGYPLDTLRILQQNSNMPTSVIRLIKNVVSKEGPASLYRGMAAPLAAITFQNAMIFQTYAVLSRVFDSSVSANNPPSYNSVALAGFITGALQSTIVSPVELVKIRLQLQSKGQLTTESYKGPLSMTRKIWNREGLRGIFRGFGITVLRDAPGHGVYFWTYEYMREQLHPGCRETSQERLSTMLIAGGLAGVVSWIGCYPFDVIKTRLQAQTQSSLRYIGIIDCLGKTVREEGHNVLWRGIGTTVGRAFIVNGAVFAAYEIAMRSLSDNNGSSSTNNLGDPFFSRNTRQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0388 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 144 234 IPR018108 -
Lele38g0388 356 SUPERFAMILY Mitochondrial carrier 52 327 IPR023395 -
Lele38g0388 356 Gene3D Mitochondrial carrier domain 53 345 IPR023395 -
Lele38g0388 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 50 133 IPR018108 -
Lele38g0388 356 MobiDBLite consensus disorder prediction 336 356 - -
Lele38g0388 356 Pfam Mitochondrial carrier protein 149 235 IPR018108 -
Lele38g0388 356 Pfam Mitochondrial carrier protein 248 336 IPR018108 -
Lele38g0388 356 Pfam Mitochondrial carrier protein 53 134 IPR018108 -
Lele38g0388 356 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085
Lele38g0388 356 PRINTS Mitochondrial carrier protein signature 207 225 IPR002067 GO:0055085
Lele38g0388 356 PRINTS Mitochondrial carrier protein signature 159 177 IPR002067 GO:0055085
Lele38g0388 356 PRINTS Mitochondrial carrier protein signature 55 68 IPR002067 GO:0055085
Lele38g0388 356 PRINTS Mitochondrial carrier protein signature 68 82 IPR002067 GO:0055085
Lele38g0388 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 332 IPR018108 -
Lele38g0388 356 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 51 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0388 Lele-ChrLele38 3143368 3148918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0388 68 339 Antiporters AT1G79900 60.294 1.41e-120 348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0388 38 3143368 3148918 Lele41g0841 41 18120074 18124021 CCT
Lele38g0388 38 3143368 3148918 Lele42g0830 42 21215752 21219719 CCT
Lele38g0388 38 3143368 3148918 Lele43g0552 43 4977148 4981068 CCT
Lele38g0388 38 3143368 3148918 Lele44g0515 44 3961532 3964636 CCT
Lele38g0388 38 3143368 3148918 Lele38g0388 38 3143368 3148918 ECH
Lele38g0388 38 3143368 3148918 Lele39g1015 39 18860814 18864776 hybridization
Lele38g0388 38 3143368 3148918 Lele40g0367 40 3001708 3003100 hybridization