Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0360 ATGTCTAAACCATTAGAACATGATTACATAGGCTTAGCAGCATCAGAGAATCGTTCCATGGAGACAAACTCTGAGAAAATATCCTCTCCTTCTTCTGCTTCTTCGTCTACTCTTTCTTCTCTTAATTTCAAAGAGACAGAGCTCAGGCTTGGCCTTCCTGGTAGTGATTCTCCTCCTCCTGAGAGGAAATCTGGAAGTGGGATTTCTCTTTTTGGCAAGGATTTGCAGAGTAATCATAATAATACTGATCCTAGTGCTAATAATGGGTTCTGCTCTTCTTCTTCTTCCCCTTTGAAGAACAACAACGTGGCTGGAGCTAAGAGGGGTTTTTCTGAAGCCATTGATGGGAAATGGGGTTTCTCTGTGAGTGACAAAATTATTGGGTCTGAAGCTGATTTGGGAAAAGGAGTTTCTTTGTTCTCTCCCAGAGGAGGAGGGAATCTCGTGAAGCCTCCTCTCGTATCTGCAGAAGTTTCTGCAAATCCTGAACAAAAAAACACTAAAGATGGCGGAATAGTTCGAGAGGAGGAGAAACCTCAAGTTACTGTTTCTGCTACAAATGACCATGGAAGTTCTCCTCCTGCTGCTAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCCTTTCGAAAGAACAGCATGGCCTCTAATTCGGCGAAGAACAATGATGAAGGCGAGGCAAAAGCAGGATATGGCTGTCTCTATGTGAAGGTCAGCATGGATGGTGCTCCTTATCTCAGAAAGGTTGATCTCAAAACCTTTACCAACTATGTGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAGTTCTGGAGGACTCGCCGTGAAAGGTGGCCTGAGCGAGAGCTCTTTGAGGGACCTTCTTCATGGTTCTGAATATGTTCTTACTTATGAAGATAAGGATGGAGATTGGATGCTTGTTGGTGATGTTCCCTGGGAGATGTTCACTGACTCATGTAGGAGATTAAGGATCATGAAAGGTTCTGAGGCGATCGGGCTCGCTCCAAGGGTGGTGGAAAAATCCAGGAGCCAAAACTAG 1062 0.4482 MSKPLEHDYIGLAASENRSMETNSEKISSPSSASSSTLSSLNFKETELRLGLPGSDSPPPERKSGSGISLFGKDLQSNHNNTDPSANNGFCSSSSSPLKNNNVAGAKRGFSEAIDGKWGFSVSDKIIGSEADLGKGVSLFSPRGGGNLVKPPLVSAEVSANPEQKNTKDGGIVREEEKPQVTVSATNDHGSSPPAAKAQVVGWPPIRSFRKNSMASNSAKNNDEGEAKAGYGCLYVKVSMDGAPYLRKVDLKTFTNYVELSSALEKMFSCFTIGQCSSGGLAVKGGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRVVEKSRSQN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0360 353 MobiDBLite consensus disorder prediction 157 198 - -
Lele38g0360 353 ProSiteProfiles PB1 domain profile. 233 335 IPR000270 GO:0005515
Lele38g0360 353 Pfam AUX/IAA family 45 344 IPR033389 -
Lele38g0360 353 MobiDBLite consensus disorder prediction 1 98 - -
Lele38g0360 353 MobiDBLite consensus disorder prediction 16 44 - -
Lele38g0360 353 Gene3D - 228 347 - -
Lele38g0360 353 FunFam Auxin-responsive protein 228 345 - -
Lele38g0360 353 MobiDBLite consensus disorder prediction 70 98 - -
Lele38g0360 353 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 41 340 IPR003311 GO:0005634|GO:0006355
Lele38g0360 353 SUPERFAMILY CAD & PB1 domains 233 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0360 Lele-ChrLele38 2932035 2934393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0360 237 343 B3 DNA Binding Superfamily AT4G23980 30.841 1.45e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele38g0360 AUX_IAA 9.6e-90 CL0072