Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0354 ATGACGATTCAAACCTCCACTGAAACTACCAGTTCCAGTCACTCTCCTTCTCCTTCTTCCTCTTCTGAACCATCTAACCCAACTTCCAACTCTCAGACCCAGAAAACTCAGTCTCAGAGCAAACAAGAACAGAGCAATAGCAGAGCCAAGAGAAGCAGAGACCCTTCTTCTGAGAAGCACCCATCTTATCATGGAGTCCGAATGCGAAATTGGGGCAAATGGGTCTCTGAAATTAGGGAGCCTCGCAAGAAATCACGAATCTGGCTCGGCACTTTCGCCACCCCGGAAATGGCGGCTCGAGCCCATGATGTCGCCGCTCTGAGTATCAAGGGTCAATCGGCCGTCCTCAACTTCCCTCACATAGCCTCTCTGCTTCCCAGACCTGTCACGCTCGCCCCACGTGACATCCAATCCGCCGCCGCAGAAGCCGCAGCCATGGTGAAATTCGACCCTGCTCAGCAGCTTTCGCCTTCTTCTTCTTTGCCGGAAGAAGCAGAGTCGTCGGAGCTGAGTGAGATAGTGGAATTGCCCAACATTGAAGAGAGCTTCGATTCGGTGGAGTCGTCGTCGTCGAGTAGTCACGACTTTGTGTGGGTGGAGTCAATGGATTGTTGGGTATATGATCCTCCATTAATGGGGTTACGGAAAGAAGGCTTCTTTGACCAGTTTTTTGGAGAAGAAGAAGGCTTTGAGATATCAATTTGGGATTAA 711 0.5063 MTIQTSTETTSSSHSPSPSSSSEPSNPTSNSQTQKTQSQSKQEQSNSRAKRSRDPSSEKHPSYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGQSAVLNFPHIASLLPRPVTLAPRDIQSAAAEAAAMVKFDPAQQLSPSSSLPEEAESSELSEIVELPNIEESFDSVESSSSSSHDFVWVESMDCWVYDPPLMGLRKEGFFDQFFGEEEGFEISIWD 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0354 236 MobiDBLite consensus disorder prediction 1 45 - -
Lele38g0354 236 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Lele38g0354 236 CDD AP2 61 120 IPR001471 GO:0003700|GO:0006355
Lele38g0354 236 MobiDBLite consensus disorder prediction 1 65 - -
Lele38g0354 236 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Lele38g0354 236 Gene3D AP2/ERF domain 62 121 IPR036955 GO:0003700|GO:0006355
Lele38g0354 236 MobiDBLite consensus disorder prediction 46 65 - -
Lele38g0354 236 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Lele38g0354 236 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Lele38g0354 236 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Lele38g0354 236 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 38 186 - -
Lele38g0354 236 FunFam Ethylene-responsive transcription factor 2 61 120 - -
Lele38g0354 236 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0354 Lele-ChrLele38 2883991 2884701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0354 30 210 AP2-EREBP Transcription Factor Family AT5G11590 53.769 5.07e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele38g0354 AP2 3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0354 38 2883991 2884701 Lele38g0354 38 2883991 2884701 ECH
Lele38g0354 38 2883991 2884701 Lele39g1053 39 19152541 19153275 hybridization