Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0347 ATGGAAGTGCCTGAATACTTTGTCGGTGCCTACTTCGGCTCCGGAGGGTACCATTTCTCTCCGGAAAAGCGCCACTCCGACCAGAAGCCCGCTGAGCCTTTTGCCGTCGACGACCTCCTCGACTTCTCCCATGCCGATGCTATCAAGTCCGATGCTTTCATTGGTAATGTCGCCGGGAACTCCACCGATTCCTCCACTGGAACTGCTGTTGAGAGCTGCAACTCCTCAATTTCCCGTGTCGACAACCGTTTCTCCTCCAACTTTGGTCCTCGTCCCTTCGGCGATCATCAGTTATCTGGTGAACTCTGTGTGCCGTATGATGACATGGCGGAACTGGAATGGCTATCGAACTTCGTGGAAGACTCGTTCACCGCACAAGACGAGCTGAAAACACTCCACCTTCTATCCGGCACCACCACCGCTTCCGCATTTGGCGCCAAACCTCAGACTCCAGAATCTTCCTCCTCTTCTGAAACCCTCCCGCCTTTCGCTCCCGATGCAGCTCGGAACGCACCGTTTTTCCGTCCGGAAACTCCATTACCAGGCAAAACTCGGAGCAAGCGTTCACGCGCCGCTCCTGGCGATTGGTCCACGCGCGTCGTAACACCAGCACCGCACAACCAGACGGCCACGACGGACGCGAAACCAGTGCAAGCCAAGGCGCCGACAATGAAGAAGAGGGAGAGTTCAAATTCCGATTCCTCAGGGCGGAAATGCCTGCACTGTGCCGCCGAGAAGACGCCACAATGGCGAACGGGACCCATGGGTCCGAAGACGCTGTGCAATGCCTGTGGAGTCCGGTATAAATCCGGGAGGCTGGTGCCGGAGTATCGACCGGCGGCGAGCCCGACGTTTTTGTCGACGAAGCACTCGAATTCTCATAGGAAGGTCCTGGAGCTGAGGAGGCAGAAGGAGATGCAGAGGCATCCGCAGCACCATCTGATTAATCAAGCATCAATTTTCGGTGTATCCAACGGCGGAGATGAGTTCTTGATCCATCCCCACGATGGGCCCGACTACAGGCATATAGTCGAGGGACTGCTAAAGCAGTGA 1053 0.5622 MEVPEYFVGAYFGSGGYHFSPEKRHSDQKPAEPFAVDDLLDFSHADAIKSDAFIGNVAGNSTDSSTGTAVESCNSSISRVDNRFSSNFGPRPFGDHQLSGELCVPYDDMAELEWLSNFVEDSFTAQDELKTLHLLSGTTTASAFGAKPQTPESSSSSETLPPFAPDAARNAPFFRPETPLPGKTRSKRSRAAPGDWSTRVVTPAPHNQTATTDAKPVQAKAPTMKKRESSNSDSSGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFLSTKHSNSHRKVLELRRQKEMQRHPQHHLINQASIFGVSNGGDEFLIHPHDGPDYRHIVEGLLKQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0347 350 Gene3D - 233 283 IPR013088 GO:0006355|GO:0008270
Lele38g0347 350 FunFam GATA transcription factor 219 314 - -
Lele38g0347 350 PANTHER GATA TRANSCRIPTION FACTOR 24 311 - -
Lele38g0347 350 MobiDBLite consensus disorder prediction 220 234 - -
Lele38g0347 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 296 - -
Lele38g0347 350 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Lele38g0347 350 MobiDBLite consensus disorder prediction 201 216 - -
Lele38g0347 350 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Lele38g0347 350 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Lele38g0347 350 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Lele38g0347 350 MobiDBLite consensus disorder prediction 142 161 - -
Lele38g0347 350 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Lele38g0347 350 PIRSF Txn_fac_GATA_plant 19 324 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele38g0347 350 MobiDBLite consensus disorder prediction 142 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0347 Lele-ChrLele38 2825672 2826950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0347 32 344 C2C2-Gata Transcription Factor Family AT4G32890 43.582 6.45e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele38g0347 GATA 2.1e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0347 38 2825672 2826950 Lele38g0347 38 2825672 2826950 ECH
Lele38g0347 38 2825672 2826950 Lele39g1057 39 19183082 19184352 hybridization
Lele38g0347 38 2825672 2826950 Lele40g0326 40 2691100 2692387 hybridization