Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0346 ATGTTTTCTCGTGTTCGTAGCTGTCTATTAGGGCTTAGTTTGGATGGTAAAATAGCACTGGACCACGGCAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTACCACGAATTCCCCAAACCTAGTTCCATTTGTCGCCAGCAGCTTATCCGCGAGTGCCCTATTCTCTCCAACATTGAGCCGAAGCAAATTAAAGTTTGGTTTCAGAACAGAAGATGCAGAGAGAAGCAGAGAAAAGAGGCTTTGCGCCTTCAAGCTGTTCATAGGAAGTTGACAGCCATGAACAAGCTCTTGATGGAGGAGAATGATAGGTTACAGAAGCAGGTGTCTCAATTGGTGTACGAAAATGGCTACTTTCGTCAACACACACAAAATGTGAGAGTTTTGCCTAACGTGCTTCTAGTTTGTCAGAATGTGATACGATTTTAAGAAACTTTAGCAGAGTTTCTTTCAAAGGCTACGGGGACTGCTGTTGAGTGGGTCCAGATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCACTGGCGTGGCAGCACGAGCCTGTGGTCTAGTGGGTCTTGAACCCCCGAGGGTTGCAGAAATCCTCAAAGATCTGCCTTCATGGTTTCGGGATTGCCGAGCTGTTGATGTTCTGAATGTGCTGCCCACAGCTAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCGCCAACAACATTGGCGCCTGCTCGTGACTTTTGGCTGTTGCGCTACTCATCTGTTTTAGAAGATGGCAGCCTTGTGGTCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCACCTGTGCAGCATTTTGTGAGAGCAGAGATGCTTCCCAAAGTGCTGCGTCCATGGTACGAATCATCAACAGTGATGGCTCAGAAGACAACCATGGTGGCCCTACGCCAGCTTAGGCAGATATCTCATGACGTTTCTCAGCCTAATGTCAATGGGTGGGGCAGACGACCCGCAACTTTAAGAGCACTTAGTCAGAGACTGAGCAGGGGTTTCAATGAGGCTCTAAATGGGTTTACTGATGAAGGATGGTCAATGATTGGCAATGGTGGTGTGGATGATGTAATGATCCTGGTGAATTCATCTCCTGAAAAATTAATTGGTTTAGATCTGTCCTTTGCCAATGGATTTCCATCCATTAGCAATGCAATCTTATGTGCCAAAGCATCAATGTTGTTACAGAATGTGCCTCCGGCCATTCTCCTTAGGTTTCTGCGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCTGCTTCCATTAAAGTTGGTCCTTGTAGCTGGCCAGGATCTCGTGTTGGAAACTATGGTGGTCAAGTTATGCTTCCTCTTGCCCATACTATTGAGCATGAAGAGCTTCTGGAAGTCGTTAAATTGGATGGAATTGCTCATGCTGCTGAGGACACAATAATGCCAAGAGAGCTGTTTCTTTTGCAACTCTGTAGTGGGATGGATGAGAATGCTGTTGGAACCTGTGCTGAGCTTATATTTGCTCCAATTGATGCATCCTTTGCTGATGATGCCACCCTTTTATCTTCTGGATTTCGCATTATTCCTCTCGATTTTGGGAAGGAAGCCTCTAGCCCAAATCGAACCCTTGACCTGGCATCTTCTCTTGACATTGGCCCTGCTGGAAATAAGGCATCTAATGATTATGCTGGAAATTCTGGCTATATGAGATCTGTGATGACAATAGCATTTGAATTTACATTCGAAAGTCATATGCAGGAGCATGTAGCATCCATGGCACGACAATATGTTCGCAGCATCATATCATCTGTCCAAAGGGTGGCATTAGCTCTTTCTCCATCTCATTTGGGCTCAGAGGCTGGGCTTAGTTCACCGCTTGTTAAACTTGACACAGAAATTGCTGCAATTGCATTGCTACTCTTTTGCAGCGTACTAGTGGTGCTACTTGGGAGTGGATCTGCAACGCCAGTGTTCACTTTTGCCAACCAGGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCACTACAAGACTTAAGTTTGGAGAAAATATTTGATGATCATGGTAGAAAGATCCTCTGTTCCGAGTTTCCCGAGATTATACAACAGGGCTTTGCTTGCCTTCAAGGTGGTATCTGTGTCTCAAGCATGGGGCGGCCAGTCTCACATGAGAGAGTTGTGGCCTGGAAAGTGCTGAATGAAGAGCAGAATGATCATTGCATCTGCTTTATGTTCGTGAACTGGTCTTTTGTTTGA 2310 0.4589 MFSRVRSCLLGLSLDGKIALDHGKYVRYTPEQVEALERLYHEFPKPSSICRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEALRLQAVHRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNVRVLPNVLLVCQNVIRFXETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPPRVAEILKDLPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYSSVLEDGSLVVCERSLKNTQNGPSMPPVQHFVRAEMLPKVLRPWYESSTVMAQKTTMVALRQLRQISHDVSQPNVNGWGRRPATLRALSQRLSRGFNEALNGFTDEGWSMIGNGGVDDVMILVNSSPEKLIGLDLSFANGFPSISNAILCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAASIKVGPCSWPGSRVGNYGGQVMLPLAHTIEHEELLEVVKLDGIAHAAEDTIMPRELFLLQLCSGMDENAVGTCAELIFAPIDASFADDATLLSSGFRIIPLDFGKEASSPNRTLDLASSLDIGPAGNKASNDYAGNSGYMRSVMTIAFEFTFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLGSEAGLSSPLVKLDTEIAAIALLLFCSVLVVLLGSGSATPVFTFANQAGLDMLETTLVALQDLSLEKIFDDHGRKILCSEFPEIIQQGFACLQGGICVSSMGRPVSHERVVAWKVLNEEQNDHCICFMFVNWSFV 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0346 769 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 669 769 IPR044830 GO:0003700
Lele38g0346 769 ProSiteProfiles 'Homeobox' domain profile. 19 83 IPR001356 GO:0003677
Lele38g0346 769 Pfam START domain 148 301 IPR002913 GO:0008289
Lele38g0346 769 Coils Coil 93 120 - -
Lele38g0346 769 Pfam MEKHLA domain 642 768 IPR013978 -
Lele38g0346 769 SMART START_1 145 369 IPR002913 GO:0008289
Lele38g0346 769 SUPERFAMILY Bet v1-like 148 298 - -
Lele38g0346 769 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Lele38g0346 769 Gene3D - 180 318 IPR023393 -
Lele38g0346 769 Gene3D - 19 88 - -
Lele38g0346 769 SMART HOX_1 21 87 IPR001356 GO:0003677
Lele38g0346 769 CDD bZIP 76 115 - -
Lele38g0346 769 Pfam Homeodomain 24 82 IPR001356 GO:0003677
Lele38g0346 769 ProSiteProfiles START domain profile. 149 298 IPR002913 GO:0008289
Lele38g0346 769 CDD homeodomain 24 84 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0346 Lele-ChrLele38 2802942 2812573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0346 15 721 Homeobox Transcription Factor Family AT1G52150 71.665 0.0 1104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele38g0346 START 3.1e-32 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0493 43 4481572 4491294 Lele38g0346 38 2802942 2812573 CCT
Lele44g0462 44 3488295 3496404 Lele38g0346 38 2802942 2812573 CCT
Lele38g0346 38 2802942 2812573 Lele38g0346 38 2802942 2812573 ECH
Lele38g0346 38 2802942 2812573 Lele39g1058 39 19194500 19201233 hybridization
Lele38g0346 38 2802942 2812573 Lele40g0325 40 2667799 2676387 hybridization