Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0342 ATGCCGGTAGTGCGTAGTGGAGTGCGCAGGGGCAGGGCAGCAGCAAAGAAACAGCAGCAGCAACCTAATCCATTGATCGAGGAAGGGGAAGCAATTGCAACAAGAACAAGGGGGAGGCGGGCGGCGGCGGCGGCAGCTGAGCCTAAGGCTAACGAACAACAGAAGCAGGCGGTGGTCGATGAGAAGGTAGTTGTACCGGTGAAGGAGGACGAGATCAAGGGTGTGAACGAAGCTATTCGTGTTGGTGAAGCTGCTGCTGGTGGAGCGGAGAGAGAAGAGGTAGGGGAGAAGCAGATGGATGAATACGATAGTGGAGCCCGGAGCAATGATAAGGGCAATGCCGGTGAAGATGAAGGGAGCACTGCTCCGCTTCCTGAGAAGGTTCAAGTTGGTGGTTCCCCTATGTATAAAATTGAGAGAAAACTGGGTAAGGGTGGATTTGGACAAGTATATGTTGGTCGACGGATTTCTGGTTTAAATATGAATGAGAGGACTGGACCTGGAGCTGTAGAGGTTGCCCTAAAATTTGAGCATAGAAGTAGTAAAGGATGTAACTATGGACCGCCATATGAGTGGCAAGTGTACAATAATCTTGGTGGAAGTCATGGTGTGCCACGTGTACACTACAAGGGAAGGCAAGGTGACTATTATATCATGGTTATGGATATGTTGGGGCCTAGTTTGTGGGATGTTTGGAATAATAACTCTCACACAATGTCCACGGAAATGGTTGCTTGTATTGCTATTGAAGCAATATCTATATTGGAAAAGATGCACTCTCGAGGGTTTGTGCATGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCTCCTGGGACCCCTGATGAAAAAAAGCTGTTTCTTGTTGATCTTGGATTAGCTACTAGATGGAGGGATACTGCAACGGGTATGCATGTGGATTATGACCAACGCCCAGATGTTTTCAGGGGTACAGTTCGCTATGCTAGTGTGCATGCACACTTGGGAAGAACTGGAAGCAGGAGGGATGATCTGGAATCGCTAGCTTACACATTGATTTTCCTTCTTCGAGGTCGTCTCCCTTGGCAGGGGTATCAGGGAGAAAACAAGGTGTTTCTTGTTTGCAAGAAGAAGATGGGAACTTCTCCGGAGAGCCTATGTTGCTTCTGCCCCCAGCCTTTTAGACAGTTTGTTGAACATGTGGTGAACTTGAAGTTCGATGAAGATCCTAACTATGCAAAATATATTTCTTTGTTCGATGGAATTGTTGGTCCAAATCCAGACATTAGGCCAATTAATACGGAAGGTGCACAAAAGCTCATTGGTCATAAGAGAGGTCGGTTGGCCATGGAAGAAGAGGACGATGAACAACCTAAAAAGAAGATACGCATGGGTATGCCAGCAACGCAATGGATAAGTGTTTACAATGCTCGCAGACCAATGAAACAAAGATATCATTACAACGTGGCAGATACAAGGCTGTCCCAGCACATTGAGAAAGGAAATGAGGATGGGTTATATATTAGTAGCGTGGCTTCATCTCAGAACCTGTGGGCCCTAATCATGGATGCAGGAACTGGTTTTACTGCCCAGGTTTATGAACTCTCTCCCTCTTTTCTCCACAAGGAATGGATAATGGATCAGTGGGAAAAAAATTACTATATAAGTGCAATAGCTGGAGCTACAAATGGGAGTTCATTAGTAGTGATGTCTAAGGGCACACAGTTTGTACAGCAATCCTACAAAGTGAGTGATTCATTTCCATTCAAGTGGATAAACAAAAAATGGAGGGAGGGCTTTTATGTCACTGCAATGGCCACTGCTGGTAGCAGATGGGCAGTAGTAATGTCTCGTGGTGCAGGATTTTCTGATCAGGTGGTTGAACTAGATTTCCTTTATCCCAGTGAAGGGATTCACAAACGATGGGATTACGGATACCGTATCACAGCAACCGCAGCAACATGGGATCAAGCAGCATTTGTCCTCAGTGTGCCTAGGAGGAAACCTGCGGATGAAACACAGGAAACACTCAGAACTTCGTCTTTTCCCAGTGTACATGTCAAGGAGAAGTGGGCAAAGAACCTGTATATTGCATCTATTTGCTATGGAAGAACAGTATCTTGA 2103 0.4598 MPVVRSGVRRGRAAAKKQQQQPNPLIEEGEAIATRTRGRRAAAAAAEPKANEQQKQAVVDEKVVVPVKEDEIKGVNEAIRVGEAAAGGAEREEVGEKQMDEYDSGARSNDKGNAGEDEGSTAPLPEKVQVGGSPMYKIERKLGKGGFGQVYVGRRISGLNMNERTGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNNLGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGFVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDTATGMHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKVFLVCKKKMGTSPESLCCFCPQPFRQFVEHVVNLKFDEDPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMEEEDDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADTRLSQHIEKGNEDGLYISSVASSQNLWALIMDAGTGFTAQVYELSPSFLHKEWIMDQWEKNYYISAIAGATNGSSLVVMSKGTQFVQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAVVMSRGAGFSDQVVELDFLYPSEGIHKRWDYGYRITATAATWDQAAFVLSVPRRKPADETQETLRTSSFPSVHVKEKWAKNLYIASICYGRTVS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0342 700 SMART serkin_6 136 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele38g0342 700 FunFam casein kinase 1-like protein HD16 109 456 - -
Lele38g0342 700 CDD STKc_CK1 135 412 - -
Lele38g0342 700 MobiDBLite consensus disorder prediction 1 59 - -
Lele38g0342 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Lele38g0342 700 ProSiteProfiles Protein kinase domain profile. 136 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele38g0342 700 ProSitePatterns Protein kinases ATP-binding region signature. 142 175 IPR017441 GO:0005524
Lele38g0342 700 MobiDBLite consensus disorder prediction 84 131 - -
Lele38g0342 700 SUPERFAMILY Protein kinase-like (PK-like) 136 416 IPR011009 -
Lele38g0342 700 Pfam Protein kinase domain 136 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele38g0342 700 PANTHER CASEIN KINASE-RELATED 130 663 - -
Lele38g0342 700 Gene3D Transferase(Phosphotransferase) domain 1 101 459 - -
Lele38g0342 700 MobiDBLite consensus disorder prediction 86 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0342 Lele-ChrLele38 2764381 2769292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0342 231 412 MAP Kinase Kinase Kinase AT5G50180 25.789 1.97e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lele38g0342 Pkinase 1e-16 CL0016