Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0336 ATGTATATGAGGTCGAGAAATGAGGAGGTGTCTCCTCAGCTGCTTGATTTGATCTCAAGGGATAAAAAAGAATGGCATATGAACAACACAGAAGAAGAAGGAAGAACCCAAAACAAGTCTTGTTCTGAGGAGAGAAAACTTGAGCTCAGACTTGCTCCACCTGGTGAAGATCATGAGTCTCTACTCTCTCTTGGTTACTTCTATCAGCAAGCCCAGAAAATCTCCAACTCTCCATGGCCTTCTTCTTCTAAGGCTTCATCATTTCTTCAGTTCTCACCAGAGAAGAAAGCTTTCTCTTCATCTTGTTCTGCGAATCCATCTTTGCCCTCTAGTAATATCTCTCAGAAAAGAACTGCTCCTGGGCCAGTAGTGGGTTGGCCTCCAATTCGTTCATTTAGGAAGAACCTTGCAAGCAGCAACAGCGGCATTTCTAAGACAGCTAATGAGACACAACAGCAGCATGATGTTGCAGACAAGGTTGCTGGGAAGGAACCTGTTGTTGTTGACAACGTTGGTAATAAAGGTTTGTTTGTGAAGATCAACATGGATGGAGTTCCCATAGGGAGAAAAGTGGACCTTAATGCCTATGATAGCTATGAAAAACTCTCCTCTGCAGTTGATGAACTCTTCAGATGCCTCCTTGCTGCTCAAAGAGATTCCTGTGCTGGAGGAATCAAGAACAAGGAAGAGGAAGAAGAAAAAGCTATAACAGGTTTATTGGATGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTCGTTGGAGACGTGCCATGGCACATGTTCGTATCAACTGTGAAAAGGCTGCGTGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGTAACAAGCAAGGCAAGAAAGCCACTTGA 894 0.4362 MYMRSRNEEVSPQLLDLISRDKKEWHMNNTEEEGRTQNKSCSEERKLELRLAPPGEDHESLLSLGYFYQQAQKISNSPWPSSSKASSFLQFSPEKKAFSSSCSANPSLPSSNISQKRTAPGPVVGWPPIRSFRKNLASSNSGISKTANETQQQHDVADKVAGKEPVVVDNVGNKGLFVKINMDGVPIGRKVDLNAYDSYEKLSSAVDELFRCLLAAQRDSCAGGIKNKEEEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGNKQGKKAT 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0336 297 MobiDBLite consensus disorder prediction 138 155 - -
Lele38g0336 297 MobiDBLite consensus disorder prediction 100 127 - -
Lele38g0336 297 MobiDBLite consensus disorder prediction 15 44 - -
Lele38g0336 297 ProSiteProfiles PB1 domain profile. 175 280 IPR000270 GO:0005515
Lele38g0336 297 MobiDBLite consensus disorder prediction 1 44 - -
Lele38g0336 297 MobiDBLite consensus disorder prediction 100 118 - -
Lele38g0336 297 SUPERFAMILY CAD & PB1 domains 173 277 - -
Lele38g0336 297 Gene3D - 170 291 - -
Lele38g0336 297 MobiDBLite consensus disorder prediction 138 157 - -
Lele38g0336 297 FunFam Auxin-responsive protein 170 292 - -
Lele38g0336 297 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 45 283 IPR003311 GO:0005634|GO:0006355
Lele38g0336 297 Pfam AUX/IAA family 47 285 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0336 Lele-ChrLele38 2675411 2678277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0336 178 291 B3 DNA Binding Superfamily AT4G23980 34.211 5.83e-15 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele38g0336 AUX_IAA 4.3e-69 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0353 37 2938337 2940003 Lele38g0336 38 2675411 2678277 ECH
Lele38g0336 38 2675411 2678277 Lele38g0336 38 2675411 2678277 ECH
Lele38g0336 38 2675411 2678277 Lele39g1073 39 19339271 19342176 hybridization
Lele38g0336 38 2675411 2678277 Lele40g0316 40 2549403 2550937 hybridization