Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0331 ATGCAAAGCTCTGTCATGAGGGTCCTCAGAGCTGTCTTCACCACCAAGCTCCACCTGCTATACCCCACCACTATCAAACGCCTTTCAGCTCCTTCTCTCATTTCCTTTTGTTCCTTTCCGAACCCTCGATTTTCTCGTTATTCCCATTCCGCAAGCAGTCATCAGATAGATTCGAGCTCTGGCATTGATACCCCAGAAGAACCGAATACCAGTTTAAAAACTCATTCCGAAGAAAAAACTTGGTCGCGACATGGTCATTTATTTAAATCCTCTAGGGAAGGGAAGAAGAATCCGTTGGACTCTGGGGATAATAAAGTTGAAAACTTTGGAAGCCAAAGTGAAAATGGAAGAGCGACGGAGGCGAGCTCAGTTCAAGGTACCGAACAAGATGGAGGTATTCGAAGGAGAGGGGGGATCAAGAAAAAGGAAAAAGGAAAAAGCCATTGGGTTTGCTCCAATTGTGGGTATACGGCTGGGCAATGGTTCGGATTTTGCCGCTCGTGTAATAGTGCTTCCACGATGAAAGAGTTTCGTGAAGCGAAAGTCAGTGGTCCTGGTAAGGTTAGTGGCTTTTCAGTTTCTGAAAATGTAATGGGGTCGTGGCTCCCTCAACAGGCAGGTGAATTGCGTCCTTTGAAATTGACGGATGTAAACCGTGGAGTTAATCGTCAAGAGTGGAGATTTCCTTTCTCTGGTCCTTTTGGAAATGAAGTTTCAAGAGTGCTTGGAGGTGGTCTTGTACCAGGCTCTTTGATTTTAGTTGGTGGTGATCCTGGTGTTGGGAAGAGTACACTTTTGTTGCAGATTGCTGCAATGATAGCAGATGGGTGCAAAAGTGATGAAGCAGCTCCAGTTGTATATGTATCTGGTGAAGAGAGCATTGAGCAACTCGGTAACAGAGCAGATCGCCTGGGGATTGAATCAGAGATATATATATACTCAAGTACTGATATTGAGGACATATTGGAGAAAACTCAGCGTCTCTCCGCTCGAGCTGTAGTGGTTGATTCAATACAAACTGTTTATTTGAAAGGAATAATTGGAAGTGCTGGAGGGATTTCGCAGGTGAAGGAATGTACTTCAGCATTGCTGCGATATGCCAAACGGACTAACACTGCAGTTTTTTTGATTGGGCATGTAACAAAATCTGGAGATATAGCAGGACCTCGTGTCTTGGAGCACATTGTTGATGTTGTTTTATATATGGAAGGTGAGAAGTACTCTTCCCATCGAATGCTTCGAGTGGTGAAAAATCGGTTTGGATCCGCTGATGAGCTTGGAGTCTTTGAGATGTCACAATTAGGCCTCCGGGCTGCTTCAAATGCCAGTGCAATATTTCTAAGTGAGCAACACTTAGATTCAGATGTTTTAGCCGGATTAGCTATTGCTGTCGTAATGGATGGGTCTCGAGCTTTCCTTATTGAAATTCAGGCACTTTGTGTTTCTGGCTCAACTGTCTCAAGGCATGTTAATGGCATTCAACAAAGTAGAGCTGATATGATCATATCTGTACTTATAAAGCAAGCTGGACTTCGACTTCAAGAAAATGCTGTGTTTTTAAATGTTGTTAGCGGATTTCAGCTGACTGAGACTGCTGGAGATCTGGCAATGGCGGCTGCAATTTGCAGCAGTTTCTTGGAATTCCCTCTTCCCAAGAACATAGCATTCATTGGTGAAATTGGCCTCGCTGGTGAGCTCCGCACGGTTCCTGGATTGGATAAAAGGGTCAACACCGTTGCGAAATTGGGTTACGGAATGTGTGTTGTACCAAAAGAAGCAGTAAAACTTTTAGGAACAGATGGTTTTGGGAAGATGAAACTTGTAGGTTGCAAGAATCTGAAGGAGGTTATTAACATTGTTTTTAAAGAACGAAAATGA 1878 0.4372 MQSSVMRVLRAVFTTKLHLLYPTTIKRLSAPSLISFCSFPNPRFSRYSHSASSHQIDSSSGIDTPEEPNTSLKTHSEEKTWSRHGHLFKSSREGKKNPLDSGDNKVENFGSQSENGRATEASSVQGTEQDGGIRRRGGIKKKEKGKSHWVCSNCGYTAGQWFGFCRSCNSASTMKEFREAKVSGPGKVSGFSVSENVMGSWLPQQAGELRPLKLTDVNRGVNRQEWRFPFSGPFGNEVSRVLGGGLVPGSLILVGGDPGVGKSTLLLQIAAMIADGCKSDEAAPVVYVSGEESIEQLGNRADRLGIESEIYIYSSTDIEDILEKTQRLSARAVVVDSIQTVYLKGIIGSAGGISQVKECTSALLRYAKRTNTAVFLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSSHRMLRVVKNRFGSADELGVFEMSQLGLRAASNASAIFLSEQHLDSDVLAGLAIAVVMDGSRAFLIEIQALCVSGSTVSRHVNGIQQSRADMIISVLIKQAGLRLQENAVFLNVVSGFQLTETAGDLAMAAAICSSFLEFPLPKNIAFIGEIGLAGELRTVPGLDKRVNTVAKLGYGMCVVPKEAVKLLGTDGFGKMKLVGCKNLKEVINIVFKERK 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0331 625 Pfam AAA domain 241 384 - -
Lele38g0331 625 FunFam DNA repair protein radA isogeny 455 624 - -
Lele38g0331 625 PRINTS DNA repair protein radA signature 410 436 - -
Lele38g0331 625 PRINTS DNA repair protein radA signature 336 360 - -
Lele38g0331 625 PRINTS DNA repair protein radA signature 375 403 - -
Lele38g0331 625 PRINTS DNA repair protein radA signature 240 268 - -
Lele38g0331 625 PRINTS DNA repair protein radA signature 485 508 - -
Lele38g0331 625 PRINTS DNA repair protein radA signature 151 175 - -
Lele38g0331 625 MobiDBLite consensus disorder prediction 70 102 - -
Lele38g0331 625 FunFam DNA repair protein RadA 227 437 - -
Lele38g0331 625 Gene3D - 456 625 IPR014721 -
Lele38g0331 625 MobiDBLite consensus disorder prediction 47 69 - -
Lele38g0331 625 PANTHER DNA REPAIR PROTEIN RADA 54 623 - -
Lele38g0331 625 TIGRFAM sms: DNA repair protein RadA 144 616 IPR004504 GO:0003684|GO:0005524|GO:0006281
Lele38g0331 625 Pfam Rubredoxin metal binding domain 149 176 IPR041166 -
Lele38g0331 625 ProSiteProfiles RecA family profile 1. 224 380 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lele38g0331 625 SUPERFAMILY Ribosomal protein S5 domain 2-like 417 622 IPR020568 -
Lele38g0331 625 MobiDBLite consensus disorder prediction 47 142 - -
Lele38g0331 625 MobiDBLite consensus disorder prediction 104 129 - -
Lele38g0331 625 Pfam Subunit ChlI of Mg-chelatase 502 592 - -
Lele38g0331 625 Gene3D - 237 432 IPR027417 -
Lele38g0331 625 SMART AAA_5 248 406 IPR003593 -
Lele38g0331 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 431 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0331 Lele-ChrLele38 2622252 2628895 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0331 38 2622252 2628895 Lele41g0915 41 18644887 18654110 CCT
Lele38g0331 38 2622252 2628895 Lele42g0895 42 21701590 21710379 CCT
Lele38g0331 38 2622252 2628895 Lele43g0493 43 4481572 4491294 CCT
Lele38g0331 38 2622252 2628895 Lele44g0462 44 3488295 3496404 CCT
Lele38g0331 38 2622252 2628895 Lele38g0331 38 2622252 2628895 ECH
Lele38g0331 38 2622252 2628895 Lele40g0311 40 2502857 2509419 hybridization