Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0328 ATGGCGACACCTCCGATGGGGCTGCCGGGAAATCCATTGTTCGACGGGGCTGCGCCGCCGCCCCCACAAACTCCGTGGACTGACATGAGCGGAATATGCTTTCGAGACCAGCTCTGGCTCAACACTTACCCTCTCGATCGCAACCTAGTGTTCGACTATTTCGCCTTATCACCCTTCTACGACTGGACCTGCAACAATGAACAGATTCATATACGTTATACGTTAAGACTGACCAAGATTGGCGATAATCCTAGTGGACTTGTGTCAAATATATATTTCCTTATTCACCCTACATTACTGCCTAATGCAAAGACAGAAGAGCCAGGAGTGAGATGGGGGTCCTGGGATAAATGCTGCATAGAGTATATGCTCAGTGAAGTCATGGAACTGCACCTTTTTGTTATGCGCAAGCAAAAGAGAGATGGCCCCGAGAAAGTTACACCGATGCTAGCTTATTACATCTTGGATGGCTCAATATACCAAGCACCACAGCTATGCAATGTTTTTGCTGCTCGAATTGGAAGGGCACTATACCATATACAGAAGGCTTTTAGTACAGCTGCATCAAAGTTGGAGAAGATAGGATATGTGGATTCTGAAAATGAGCCTGCAGTGCCAGAAACAAAGGCTGGTAAAGAGAAAATTGACATAAAGGAAGTTATGCGGGTGGATCACATTCTTGCATCCCTACAGCCTCCACCTCCACCACCATTTCCTGAAGGTTACAATCCGCCTCCAACTGCGGAAACTGAGAAAGGAGCCGAAGGTAAGGACTCGGGGAAGTTCCAAATCTCAGGGAAGGACTTCCGGCCAATTATAAATAGCGTCGATCCTTCTCCTCCATATCCAAGCAAATCATTTCCTCAACCGTCTTTTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTATTCCTGCTTTACTTTTATCGCCGTTTTCTGTCTCTCTGAAGATGACTATTCTCCTTGATCATGCCGATCTGCGTGGAATTGAAGCAGAGCAAAAGAAGGCATCCATAAATGAGAAAGAGAAAGAAGTGGGATTTGTGGTTCCACAGAGGAACTCATTTGGCCATACATTTAGGGACTATGATGCTGAGAGTGAGAGACAAGAAGGAGTTCAGAACTTCTACAGGAAAAACCACACTTACCAGACCTATGACTTTGTAAAGAGGCTGAGGGAAGAGTATGGGAAACTGAACAGAGTGGAGATGACCATATGGGAATGCTGTGAGCTTCTGAATGATGTGGTTGATGAGAGTGATCCTGACTTGGATGAGCCTCAGATTGAGCACTTGCTTCAAACTGCTGAAGCCATAAGGAGGGACTATCCCAATGAAGACTGGCTTCACTTGACAGGCCTTATCCATGATCTTGGGAAAGTGCTTCTACTTCCTAGCTTTGGAGGGCTTCCTCAGTGGGCTGTTGTAGGGGATACATTCCCAGTTGGATGCAGATTTGACAGTTCCATTGTCCATCACCAGTACTTCAAGGAGAATCCAGACTACAACAATTGTGCTTACAACACTAAATATGGGATGTACTCAGAGAAATGTGGACTCAACAATGTCATGATGTCTTGGGGACATGATGATTATATGTATCTGGTGGCAAAGGGGAACAATACTACTCTGCCTTCAGCTGCTCTGTTCATTATCAGATACCATTCGTTCTATGCATTACACAGAGCAGGGGCATATAAGCACTTAATGAACGATGAAGACGTTGAGAATCTGAAATGGCTGCATATTTTCAACAAATATGATCTGTACAGCAAGAGCAAAGTCAGAATAGACGTTGAGAAGGTTAAACCGTACTACCTATCTCTTATTGACAAGTATTTCCCTGCAAATGCAAAGCTCAAGTGGTGA 1866 0.4464 MATPPMGLPGNPLFDGAAPPPPQTPWTDMSGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQIHIRYTLRLTKIGDNPSGLVSNIYFLIHPTLLPNAKTEEPGVRWGSWDKCCIEYMLSEVMELHLFVMRKQKRDGPEKVTPMLAYYILDGSIYQAPQLCNVFAARIGRALYHIQKAFSTAASKLEKIGYVDSENEPAVPETKAGKEKIDIKEVMRVDHILASLQPPPPPPFPEGYNPPPTAETEKGAEGKDSGKFQISGKDFRPIINSVDPSPPYPSKSFPQPSFSSLLLLLLLLIPALLLSPFSVSLKMTILLDHADLRGIEAEQKKASINEKEKEVGFVVPQRNSFGHTFRDYDAESERQEGVQNFYRKNHTYQTYDFVKRLREEYGKLNRVEMTIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRRDYPNEDWLHLTGLIHDLGKVLLLPSFGGLPQWAVVGDTFPVGCRFDSSIVHHQYFKENPDYNNCAYNTKYGMYSEKCGLNNVMMSWGHDDYMYLVAKGNNTTLPSAALFIIRYHSFYALHRAGAYKHLMNDEDVENLKWLHIFNKYDLYSKSKVRIDVEKVKPYYLSLIDKYFPANAKLKW 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0328 621 MobiDBLite consensus disorder prediction 229 265 - -
Lele38g0328 621 Pfam Myo-inositol oxygenase 370 621 IPR007828 GO:0005506|GO:0005737|GO:0019310|GO:0050113
Lele38g0328 621 Gene3D Mediator complex, subunit Med6 26 187 IPR038566 -
Lele38g0328 621 MobiDBLite consensus disorder prediction 229 244 - -
Lele38g0328 621 SUPERFAMILY HD-domain/PDEase-like 362 616 - -
Lele38g0328 621 PANTHER MYOINOSITOL OXYGENASE 317 621 IPR007828 GO:0005506|GO:0005737|GO:0019310|GO:0050113
Lele38g0328 621 Coils Coil 619 621 - -
Lele38g0328 621 MobiDBLite consensus disorder prediction 1 20 - -
Lele38g0328 621 Pfam MED6 mediator sub complex component 32 189 IPR007018 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0328 Lele-ChrLele38 2595120 2604913 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Lele38g0328 MIOX 2.6e-123 CL0237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0328 38 2595120 2604913 Lele38g0328 38 2595120 2604913 ECH
Lele38g0328 38 2595120 2604913 Lele39g1081 39 19413756 19416585 hybridization
Lele38g0328 38 2595120 2604913 Lele40g0307 40 2479776 2481376 hybridization