Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0322 ATGGATGGTCTGAGTTGGGATGCCTCAAATGCTGCGGAGAACCTACCCATATTGTGGAGCAATATAGAACAACAAGAGCTTGAAGCAAGCTTGAGTCCAAGCTTTCCTCTAGCAGGTCATCATCATCACCATCATCTATATGCAGATTCTCGGAAAGGATTGATCAAAGAGATGGTTCAATTATCAGAAGCTGATGAAGCAGAATTAGGAGCTACTACTACAAGTTCAAAGACAAATCTTCTGTCACAGCTAGTAGGTGGTCCCAGCTGCTGGGCTGGTGATGGTGGATCTTACAGTATGAATTACCCATTTGGTAATTTTGATCCTCCTGCAGAATTCAACATGGCCCACCAACAACAACAACATCATCCACAACAACTTGTCAATAATAACAATAATGGCTCGCAAAATGGTGGTACCATCTCTGCAGCTGAGTCACTGGATTGCTTGTTCTCAGCTACAAATAGTAACACAGAAACTACATCTGTTGAAGATGATGGAGTCTCCACCATTATGTTACCTGATTGCAGAAGATCATCCTTATGGAGCTTTAGTAGTTATAATAACAATGGAGGAAGTGAATCTGAGAGTACTACTAATGCTGATCATGAAGCATTATCTCAGTGTTCTTCAGATCTTTACGCAAATCAAGGAATAGTAAAAATTGCAGAATCCACCAAGACTAACAAGTGTTCAAAAAGGAGCATTCATGAAGCCTTTGATCAATATCCCTACTTCAGCATTGAAGAAGGTGGTTCAAGTTCTTCATTCAGGCTCATTAAGGAGAAGAACAGCAACAACGACAATAATCTACCAAAACCCAAAAGACCCAGCTGGGATTCTAATCTTCCAACTTCTTCAAACATCAATTTTAAGCAGCCCCATAATTCATCAACAAGAACATCATCTTCCATGGAAGAACCAGACCCAGATGCCATAGCACAGATGAAAGAGATGATATATAGGGCTGCAGCATTCAGGCCTGTGAATTTAGGAATGGAGGTGGTGGAGAAGCCAAAGAGGAAGAATGTGAAGATATCATCAGATCCTCAAACTGTGGCTGCAAGGCTGAGAAGGGAGAGAATAAGTGAAAGAATTAGTGTTTTGCAGAAACTGGTTCCTGGTGGAAGCAAGATGGACACTGCTTCAATGCTTGATGAAGCTGCAAATTACCTCAAGTTTCTAAGGTCACAAGTGAAAGCATTAGAGAGTCTAGGAAGCAAAGTTGAGGCCATGAATTGTCCTCCAACCAATATTGCCTTCTCTTTTAACCCTTCTTTTCCCATGCAGTTTAACCCTAGCTATCACCATATCCAACATTGA 1323 0.4119 MDGLSWDASNAAENLPILWSNIEQQELEASLSPSFPLAGHHHHHHLYADSRKGLIKEMVQLSEADEAELGATTTSSKTNLLSQLVGGPSCWAGDGGSYSMNYPFGNFDPPAEFNMAHQQQQHHPQQLVNNNNNGSQNGGTISAAESLDCLFSATNSNTETTSVEDDGVSTIMLPDCRRSSLWSFSSYNNNGGSESESTTNADHEALSQCSSDLYANQGIVKIAESTKTNKCSKRSIHEAFDQYPYFSIEEGGSSSSFRLIKEKNSNNDNNLPKPKRPSWDSNLPTSSNINFKQPHNSSTRTSSSMEEPDPDAIAQMKEMIYRAAAFRPVNLGMEVVEKPKRKNVKISSDPQTVAARLRRERISERISVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGSKVEAMNCPPTNIAFSFNPSFPMQFNPSYHHIQH 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0322 440 Pfam Helix-loop-helix DNA-binding domain 356 395 IPR011598 GO:0046983
Lele38g0322 440 Gene3D - 351 414 IPR036638 GO:0046983
Lele38g0322 440 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Lele38g0322 440 Coils Coil 385 405 - -
Lele38g0322 440 MobiDBLite consensus disorder prediction 263 308 - -
Lele38g0322 440 SMART finulus 352 401 IPR011598 GO:0046983
Lele38g0322 440 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 155 429 IPR045843 GO:0003700|GO:0006355
Lele38g0322 440 CDD bHLH_AtIND_like 347 405 - -
Lele38g0322 440 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 409 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0322 Lele-ChrLele38 2539060 2540382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0322 146 439 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.180 8.90e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele38g0322 HLH 1.2e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0452 43 3970114 3974005 Lele38g0322 38 2539060 2540382 CCT
Lele44g0442 44 3315561 3317656 Lele38g0322 38 2539060 2540382 CCT
Lele41g0943 41 18947521 18948132 Lele38g0322 38 2539060 2540382 CCT
Lele42g0912 42 21868968 21869579 Lele38g0322 38 2539060 2540382 CCT
Lele38g0322 38 2539060 2540382 Lele38g0322 38 2539060 2540382 ECH
Lele38g0322 38 2539060 2540382 Lele39g1083 39 19427918 19429222 hybridization
Lele38g0322 38 2539060 2540382 Lele40g0301 40 2427074 2428399 hybridization