Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0293 ATGAACGTTCGCAACACCAACAACAATAATACCATCCACAACAACAATAATCAGGCTTGTGCTGCTTGTAAGTTCCAACGTAAGAAGTGTGCTCCTGACTGTATTCTCGCACCTTATTTCCCTTACGATCGACAACGTCAATTCCTCAACGCTCATAAATTGTTCGGTGTTCGTAATATCACTAGAATCATCGAAAACCTCGACCCTCACCATCGGAACGAAGCCATGCGAACCATCATTTATCAATCTGACATGCGAGCCACTGACCCCGTTGGAGGTTGTTATAGGTACATTAACGAACTCGTGGCTCAGATTCAATACCACGAGGCCGAACTTGAGCTTGTTCTTCAACAACTAGCTGTGTTCCGTGCCCAAGCTCGTCATCACCATCATCCTCATCATCATAACATTGTTGATGCTAACCCGGATCATTTCAGCTTGTATAGCAGCCCTAATATTGCAGCAGTTCCATCACCAATTTCTCATTATCATCACATTCAACAACAACAAGATCCGGTGAATATGGTGGTGGTTAAAAAGGATCATGACAGTAATTATAATGATAATGTTGATAACAATTTTTAG 585 0.4205 MNVRNTNNNNTIHNNNNQACAACKFQRKKCAPDCILAPYFPYDRQRQFLNAHKLFGVRNITRIIENLDPHHRNEAMRTIIYQSDMRATDPVGGCYRYINELVAQIQYHEAELELVLQQLAVFRAQARHHHHPHHHNIVDANPDHFSLYSSPNIAAVPSPISHYHHIQQQQDPVNMVVVKKDHDSNYNDNVDNNF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0293 194 Coils Coil 98 118 - -
Lele38g0293 194 Pfam Lateral organ boundaries (LOB) domain 19 114 IPR004883 -
Lele38g0293 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 164 - -
Lele38g0293 194 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0293 Lele-ChrLele38 2309876 2310460 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0293 18 170 AS2 family AT3G13850 55.696 4.76e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lele38g0293 LOB 2.1e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0984 41 19272500 19273076 Lele38g0293 38 2309876 2310460 CCT
Lele42g0948 42 22199131 22202232 Lele38g0293 38 2309876 2310460 CCT
Lele38g0293 38 2309876 2310460 Lele39g1117 39 19691391 19694657 hybridization
Lele38g0293 38 2309876 2310460 Lele40g0277 40 2210805 2211569 hybridization