Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0286 ATGTTCCCCGGCCTCCATCATCACCATAATATGTCTAATTTGATGACTACTTCTGCATCTGCTGAATCCAATGTTTCAATTTATCCTCATCCTCGTCAACAATACTTGGCTTCGTCTCGATTATCTCAGCCAGTGAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCAGAGGCTGAAGTGATCGCCTTGTCGCCAAAGACTCTGCTAGCGACGAACAGGTTCATATGCGAGATCTGCAACAAAGGGTTTCAAAGGGACCAGAATCTGCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCAGAGAACGAGCAAAGAGATTATAAGGAAGAAGGTGTACGTGTGCCCAGAACCAACCTGCGTCCACCATGAGCCTTCAAGAGCACTCGGAGACCTCACAGGGATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGATAAGTGTTCCAAAAGGTACGCTGTTCAATCCGATTGGAAGGCTCATTCCAAAACCTGTGGCACCAGAGACTACAGATGTGACTGTGGAACTCTCTTCTCTAGGAGGGACAGTTTCATAACGCACAGAGCATTCTGTGATGCATTAGCAGAAGAGAGTGCAAGATCATCACGAAACCACCACCAAGTTCTTCTTCTTCCCTCTTCACAACAACCACACTTAAACACTTCTACTTATAATAATAATAATAATCTCCAAACCCAATTCAATAATATTAATAATCCCTTGAAAAACGAGGTCACTCTCACGTGTTCTTCTTCTCCTTCTTCTAGTCTCAGGCAAGGATTTCATCAGATTCCCTCTTGGCTTGGTGGCCCACCCACTAGCTCTGCCATAGATCACCACCGTCAACTTCATCATCTTATAAGCCATGAAAGTCCAAACCCTAACCCTAGTGCTACTAGCCTCGGCCCCACCACCACCAGCACTAGTCTTCTTCCAGGTCCAGCGCCTTCTTCGCACATGTCTGCCACAGCCTTGCTTCAGAAAGCGGCTCAGATGGGTTCGACCCTCAGCCAAACCTGTTCGTCCATGCTCAGGACCCACCACAACAATACCACTAGTCATGTGTCTGCTACTACCACTGATCTCTCTGACGGTTTTAAACCTCAAGGTCACGTGACCACGACCAGCCATGGCTTCTTCTTGTCTCCTTTCTCTTTCTCTTCTTCTTCTACTACTTCTGATCAATTTGGAGTTGGTGCGGGTTTTTTGGAGGAGGCTTTGATTATTAATGGTGGGATTTTGAATCCCAATAAAAAAGATGCTAACTTGCATGACGGTGCTCTTTTCAAAACAACCGACTCCGGTGGCGGCGGTCGGAGAAGTGGCGGTGGTAGTGTTGGGAATGAGGGTTTCACGAGAGATTTCTTGGGTCTGAAACCTCCTTCCCATAATGATATGCTCAGCATGGCTGGTATTGGAAACTGCATAAGCTCTTCTTCTTCCTCCTCCCACCAGCAGGATCAGCCAATTCGTCAATTCCAATGGCAAGCTTAA 1521 0.4707 MFPGLHHHHNMSNLMTTSASAESNVSIYPHPRQQYLASSRLSQPVKKKRNLPGNPDPEAEVIALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIIRKKVYVCPEPTCVHHEPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTRDYRCDCGTLFSRRDSFITHRAFCDALAEESARSSRNHHQVLLLPSSQQPHLNTSTYNNNNNLQTQFNNINNPLKNEVTLTCSSSPSSSLRQGFHQIPSWLGGPPTSSAIDHHRQLHHLISHESPNPNPSATSLGPTTTSTSLLPGPAPSSHMSATALLQKAAQMGSTLSQTCSSMLRTHHNNTTSHVSATTTDLSDGFKPQGHVTTTSHGFFLSPFSFSSSSTTSDQFGVGAGFLEEALIINGGILNPNKKDANLHDGALFKTTDSGGGGRRSGGGSVGNEGFTRDFLGLKPPSHNDMLSMAGIGNCISSSSSSSHQQDQPIRQFQWQA 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0286 506 Gene3D Classic Zinc Finger 54 123 - -
Lele38g0286 506 SMART c2h2final6 117 147 IPR013087 -
Lele38g0286 506 SMART c2h2final6 75 97 IPR013087 -
Lele38g0286 506 SMART c2h2final6 152 172 IPR013087 -
Lele38g0286 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 487 IPR031140 -
Lele38g0286 506 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Lele38g0286 506 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Lele38g0286 506 MobiDBLite consensus disorder prediction 297 329 - -
Lele38g0286 506 MobiDBLite consensus disorder prediction 38 59 - -
Lele38g0286 506 MobiDBLite consensus disorder prediction 439 467 - -
Lele38g0286 506 SUPERFAMILY beta-beta-alpha zinc fingers 74 172 IPR036236 -
Lele38g0286 506 FunFam protein indeterminate-domain 12-like 54 123 - -
Lele38g0286 506 Gene3D Classic Zinc Finger 128 211 - -
Lele38g0286 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Lele38g0286 506 MobiDBLite consensus disorder prediction 296 329 - -
Lele38g0286 506 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
Lele38g0286 506 MobiDBLite consensus disorder prediction 486 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0286 Lele-ChrLele38 2274702 2277183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0286 10 490 IDZ Gene Family AT1G55110 46.169 2.16e-124 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele38g0286 zf-C2H2_jaz 7.4e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0286 38 2274702 2277183 Lele39g1121 39 19722317 19724685 hybridization
Lele38g0286 38 2274702 2277183 Lele40g0271 40 2174831 2177166 hybridization