Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0278 ATGGGTCATCACTCTTGCTGTAACAAGCAGAAGGTGAAAAGAGGATTATGGTCTCCTGAAGAAGACGAGAAGCTCATCAACTACATCACCACTTATGGCCATGGTTGCTGGAGCTCTGTCCCTAAACTTGCAGGACTTCAGAGATGTGGAAAAAGTTGCAGGTTGAGATGGATAAATTATCTGAGACCTGATCTGAAACGAGGAAGCTTTTCTCCTCAAGAAGCAGCTCTCATTATTGAACTCCATAGCATTCTGGGCAACAGGTGGGCTCAGATTGCAAAGAACCTACCTGGAAGAACAGACAACGAGGTGAAGAACTTTTGGAATTCAAGCGTCAAGAAGAAGCTTCTTTCTCGTCATGATCATCTTCTTCTTCCTCCTTTAACCACTTACAATGGTACTTCTGTGGAAAGCTTCTTCCCTCTTACTCCAAACCCTAAGAACCCTAACATGATCCAAAACTCTCACCATAATTATCACCAAGACAAGCTGTTCCTTCCCACTTGTTCATCACTTATTCAAGGTTTTCATCAATTTGATCATCATGAAGCTTCTGAAGATCTTAAGATAGGCAATCTCCTTCATGTTCAGAATCCTAATAATTTGCAGGAAATTACACCATCCAATAGGAGTGTTAATCCATCTTCTTATGAAGATACTAATTGGTCACTGGTAAATCAAGAACATACCAATCTGTTATCCCCACATTACATTGATGAGAAATTCATGAACCCAACAAGTTCAACTTTGCAGCAGCGTCATAAGAGTCAACCTGTGGATCCTCGTATTGAACAGAAAATGTTTCAGAGTACTATTGAGGATTATAATGTTTGTGGAGTCCCGTATTCATCTATATCTTCTGCTTCACAAGAACAAGACCCTCTTGTTGCAAGATTTATTCATCACAGCTATCCATCTTCTGGTTTTGGTTACCAACAAGATCATCAAAGTCAAATGGCTGACGTGGCAGCCAATCACATGGAGTTCATAGATGCCATCATGTCGTCGTTGCCATTATCATCTTCAGCGTCCTCGTCATCATCGTTATCATCAAACAATCAAGTTGTCACAAATACCCCTAATTTTCCTTCATGCTGGGAGCCATGA 1107 0.4083 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKNLPGRTDNEVKNFWNSSVKKKLLSRHDHLLLPPLTTYNGTSVESFFPLTPNPKNPNMIQNSHHNYHQDKLFLPTCSSLIQGFHQFDHHEASEDLKIGNLLHVQNPNNLQEITPSNRSVNPSSYEDTNWSLVNQEHTNLLSPHYIDEKFMNPTSSTLQQRHKSQPVDPRIEQKMFQSTIEDYNVCGVPYSSISSASQEQDPLVARFIHHSYPSSGFGYQQDHQSQMADVAANHMEFIDAIMSSLPLSSSASSSSSLSSNNQVVTNTPNFPSCWEP 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0278 368 Gene3D - 11 67 - -
Lele38g0278 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lele38g0278 368 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele38g0278 368 PANTHER MYB DOMAIN PROTEIN 55 1 306 - -
Lele38g0278 368 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele38g0278 368 CDD SANT 17 61 IPR001005 -
Lele38g0278 368 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Lele38g0278 368 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele38g0278 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lele38g0278 368 Gene3D - 69 116 - -
Lele38g0278 368 SMART sant 66 114 IPR001005 -
Lele38g0278 368 SMART sant 13 63 IPR001005 -
Lele38g0278 368 CDD SANT 69 109 IPR001005 -
Lele38g0278 368 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele38g0278 368 MobiDBLite consensus disorder prediction 343 368 - -
Lele38g0278 368 FunFam MYB transcription factor 6 66 - -
Lele38g0278 368 FunFam Myb transcription factor 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0278 Lele-ChrLele38 2230259 2231919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0278 1 118 MYB Transcription Factor Family AT3G13890 94.915 5.14e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele38g0278 Myb_DNA-binding 1.4e-14 CL0123