Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0271 ATGCTTAATTCATTCTCTGTCTCTCCTGATATTCTTGGAATTGTGGGTTTTGCATTCATGCATAGTTGTTTAGAGTTCTGTGGCATTATTAGCAAGATGACGCGTTCTATGATGGCAGGATTGGCTCCAGAAGGAACTCAATTTGATGCTCGTCAATATGATGCTAAGATGACTGAATGGCTTTCCACTGACGGACAAGAATTCTTCACCTCATATGATGAAGTTTATGACACTTTTGATGCCATGGGGTTACAAGAAAATCTTTTAAGAGGCATTTATGCTTATGGACTTGATGCAATTCAACAGGCACAATCCGGGACTGGGAAAACAGCAACTTTTAGCTCTGGAATTCTGCAACTTCTTGATTGTGGAGTTCATGCTTGTGTTGGGGGAACAAGTGTACGTGAAGATCAACGAATTCTCCAATCTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGACATGCTCCGAAGGAAATCTCTTCGCTCAGACCACATAAAGATGTTTGTCTTAGATGAAGATGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTATGACATATTCCAGAGCATCTTGGTGAACCGTGATGAACTGACCCTTGAAGGTATCAAGCAGTTTTATGTCAATGTTGAGAAAGAAGATTGGAAGTTAGAAACACTATGTGATCTTTACGAAACACTTGCTATCACACAAAGTGTCATTTTTGTTAACACAAGGCGCAAGGTTGATTGGCTCACGGATAAGATGAGAAGCAGTGATCATACTGTTTCATCTACACATGGTGACATGGATCAAAACACTAGAGACATCATCATGCGTGAGTTCCGGTCGGGTTCTTCGCGAGTTTTGATCACAACCGATCTCTTGGCTCGAGGTATTGATTTTCAGCAAGTGTCATTGATTGTAAACTATGATCTGCCAACACGACCTGAGAATTATCTTCATAGGATTGGAAGAAGTGGAAGGTTTGGAAGAAAAGGTGTTTCTATATACTTTGTGACTAATGATGATTTGAGGATGTTGTCTGATATTCAGAAGTTTTATAATGTTACCATAGATGAGCTGCCATCAAATGTTGCTGATCTGCTTTGA 1107 0.4029 MLNSFSVSPDILGIVGFAFMHSCLEFCGIISKMTRSMMAGLAPEGTQFDARQYDAKMTEWLSTDGQEFFTSYDEVYDTFDAMGLQENLLRGIYAYGLDAIQQAQSGTGKTATFSSGILQLLDCGVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRKSLRSDHIKMFVLDEDDEMLSRGFKDQIYDIFQSILVNRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSSDHTVSSTHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDFQQVSLIVNYDLPTRPENYLHRIGRSGRFGRKGVSIYFVTNDDLRMLSDIQKFYNVTIDELPSNVADLL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0271 368 Pfam DEAD/DEAH box helicase 122 196 IPR011545 GO:0003676|GO:0005524
Lele38g0271 368 SMART helicmild6 248 329 IPR001650 -
Lele38g0271 368 FunFam Eukaryotic initiation factor 4A-III 202 368 - -
Lele38g0271 368 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 207 368 IPR001650 -
Lele38g0271 368 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 197 IPR014001 -
Lele38g0271 368 SMART ultradead3 77 224 IPR014001 -
Lele38g0271 368 Gene3D - 120 203 IPR027417 -
Lele38g0271 368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 349 IPR027417 -
Lele38g0271 368 CDD SF2_C_DEAD 208 338 - -
Lele38g0271 368 Pfam Helicase conserved C-terminal domain 221 329 IPR001650 -
Lele38g0271 368 Gene3D - 204 368 IPR027417 -
Lele38g0271 368 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 96 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0271 Lele-ChrLele38 2166651 2168732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0271 38 368 Eukaryotic Initiation Factors Gene Family AT1G72730 65.942 0.0 528