Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0269 ATGGGAAATCAAAAGCATAAGTGGACCGCCGAGGAAGAAGAAGCTTTGCTCGCTGGCATTGCTAAGCATGGCCCCGGCAAGTGGAAGAATATCCTCAAAGATACCGAATTTGCCCCTTTTCTCACTCACCGTTCCAACATCGATCTTAAGGATAAATGGCGAAATTTAAGTGTTAGTACTTCAGCTCAAGGATCTAAAGAAAAAGCTAGGAATCCAAAGATTAAAATTACGGAACCTGCTGGCACGCAAAACGCTTCTTTTGCTCCTCCACTTCGTCAATGTGCAGTTTCTGATGCCGTCACAGATGATTCTTCTCACAATGTGCAGGATGTCAAAAATGCTCCACAGTACGATGCAATGATTTTTGAAGCCCTATCAATGATAAGAGATTCCAATGGATCTGACCTAAATGCTATTGTTAGCTTCATTGAGCAAAAGCATGAGGTTCCTCAAAATTTCAGACGAGCAGTAGGTGCAAGGTTGAGGAAGCTTGTTGATCACAGAAAACTTGAAAAGGTACAAAACTGTTACAGGATAAAGAGAGCAACACCTCCGGAGACAAAAACACTTGCACCAAAACAAAACAATTCCAGGCCACGTCAATCACCAGCCTCTGGATTTACGGCATCTCATGAGACGGTAACGGATGCTGCGGAGATTGCGGCACACAGAATTGCTGAAGCAGAGCACAAATCACATTGGGCCGCTGAAGCAATCAAGGAGGCAGAAAAATTCTCAAAGTTGGCCGAAGATGCCGATGCAATGTTACAGCTAGCGAAAGAGATTTATGAGAAATGTAGTACAGATAAATAG 813 0.4342 MGNQKHKWTAEEEEALLAGIAKHGPGKWKNILKDTEFAPFLTHRSNIDLKDKWRNLSVSTSAQGSKEKARNPKIKITEPAGTQNASFAPPLRQCAVSDAVTDDSSHNVQDVKNAPQYDAMIFEALSMIRDSNGSDLNAIVSFIEQKHEVPQNFRRAVGARLRKLVDHRKLEKVQNCYRIKRATPPETKTLAPKQNNSRPRQSPASGFTASHETVTDAAEIAAHRIAEAEHKSHWAAEAIKEAEKFSKLAEDADAMLQLAKEIYEKCSTDK 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0269 270 PANTHER SINGLE MYB HISTONE 4 1 267 IPR044597 GO:0003691
Lele38g0269 270 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Lele38g0269 270 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 113 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele38g0269 270 SMART sant 4 59 IPR001005 -
Lele38g0269 270 FunFam Telomere repeat-binding factor 1 8 86 - -
Lele38g0269 270 SUPERFAMILY "Winged helix" DNA-binding domain 113 193 IPR036390 -
Lele38g0269 270 MobiDBLite consensus disorder prediction 188 212 - -
Lele38g0269 270 SMART h15plus2 111 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele38g0269 270 MobiDBLite consensus disorder prediction 182 212 - -
Lele38g0269 270 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Lele38g0269 270 Gene3D - 8 80 - -
Lele38g0269 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lele38g0269 270 CDD SANT_TRF 6 56 - -
Lele38g0269 270 Gene3D - 110 200 IPR036388 -
Lele38g0269 270 FunFam Telomere repeat-binding factor 1 2 58 - -
Lele38g0269 270 Pfam linker histone H1 and H5 family 115 174 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele38g0269 270 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0269 Lele-ChrLele38 2155089 2157738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0269 1 270 Single Myb Histone (SMH) Gene Family AT1G17520 49.306 1.09e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele38g0269 Linker_histone 4.5e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0269 38 2155089 2157738 Lele39g1146 39 19989141 19992377 hybridization
Lele38g0269 38 2155089 2157738 Lele40g0255 40 2028991 2031741 hybridization