Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0258 ATGGTCTCTGACTCTTACGTATCCTCTGGATCTTTCATATCTTGCCCATCATCGGCTCCAGGCTTGGGCTCCCAATTGGATCAAAATGTTGGATCTATTCGTCGTGGCTCATGGTCGATCAAAAACATGGTTCCACAAGAGGAAAAAACTGGCTTCATTTGGGTGATTCCTTCTGATGTTGTCTTCAAATTTGTGGCGAAAATGAGCATGAGTGAGAGAGATGCCGAGGAAGAATCAGCACAAGAAGTTCAAGTCCCGGCTGATATCGATTGGCATATGCTTGATAAATCGAAGTTTTTCTTCCTCGGTGCTGCCCTTTTCTCAGGGGTTTCAGCAACTCTGTACCCGATTGTTGTATTGAAAACCAGGCAGCAAGTAGCTCAATCCCAACTTTCTTGTATCCAAACTGCATTTTCACTTATTAGGCATGAGGGTTTCCGAGCATTGTACAGAGGTTTTGGTACTTCCTTAATGGGTACAATTCCAGCTCGAGCACTATATATGGCTGCCCTGGAGATTACTAAGAGCGATGTAGGAACTGTCACGGTTAGGTTAGGGCTTGCGGAACCAACTGCGGCTACTGTCGCCAATGCAGCTGCAGGTTTGAGTGCTGCCATGGCAGCTCAACTCGTGTGGACCCCTGTTGATGTTGTGAGCCAGAGGTTGATGGTTCAAGGTGGTTGTAATTCAAATAATCCTAAGGCTTCGGCACATCTATATGTCAATGGGATTGATGCATTCAGGAAAATTCTGATCTCTGATGGTCCCAGAGGTTTGTATAGGGGGTTTGGGATATCGATTTTGACATATGCACCCTCAAATGCAGTTTGGTGGGCTTCATACTCTGTTGCACAGAGGCTGATTTGGAATGGAGTTGGGTATTACTGGGGCAAGAAAGATGATAAGACCAGCGATTCTGTGGCTGATGTGTTAAGGCCAGATTCAAGAACTGTAATGGCAGTTCAGGGAGTCAGTGCAGCAATGGCTGGTGGCATGTCTGCCTTAATCACAATGCCACTAGATACGATCAAGACAAGACTTCAGGTCTTGGATGGTGATGGGAATGGCCGTCGAGGACCAACAGTTATGCAGACTGTGAGGAAATTGCTCAAGGAAGGTGGTTGGATGGCCTGTTACAGAGGGTTGGGACCTCGATGGGCTTCAATGTCAATGTCTGCGACAACAATGATCACCACATATGAGTTCTTGAAACGGCTTTCAACAAAGAATCAAGAAGTTCTGACAAGATAG 1251 0.4612 MVSDSYVSSGSFISCPSSAPGLGSQLDQNVGSIRRGSWSIKNMVPQEEKTGFIWVIPSDVVFKFVAKMSMSERDAEEESAQEVQVPADIDWHMLDKSKFFFLGAALFSGVSATLYPIVVLKTRQQVAQSQLSCIQTAFSLIRHEGFRALYRGFGTSLMGTIPARALYMAALEITKSDVGTVTVRLGLAEPTAATVANAAAGLSAAMAAQLVWTPVDVVSQRLMVQGGCNSNNPKASAHLYVNGIDAFRKILISDGPRGLYRGFGISILTYAPSNAVWWASYSVAQRLIWNGVGYYWGKKDDKTSDSVADVLRPDSRTVMAVQGVSAAMAGGMSALITMPLDTIKTRLQVLDGDGNGRRGPTVMQTVRKLLKEGGWMACYRGLGPRWASMSMSATTMITTYEFLKRLSTKNQEVLTR 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0258 416 ProSiteProfiles Solute carrier (Solcar) repeat profile. 95 177 IPR018108 -
Lele38g0258 416 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 78 412 - -
Lele38g0258 416 Coils Coil 403 416 - -
Lele38g0258 416 ProSiteProfiles Solute carrier (Solcar) repeat profile. 317 406 IPR018108 -
Lele38g0258 416 Gene3D Mitochondrial carrier domain 98 414 IPR023395 -
Lele38g0258 416 Pfam Mitochondrial carrier protein 321 410 IPR018108 -
Lele38g0258 416 Pfam Mitochondrial carrier protein 194 289 IPR018108 -
Lele38g0258 416 Pfam Mitochondrial carrier protein 106 175 IPR018108 -
Lele38g0258 416 SUPERFAMILY Mitochondrial carrier 93 403 IPR023395 -
Lele38g0258 416 ProSiteProfiles Solute carrier (Solcar) repeat profile. 192 287 IPR018108 -
Lele38g0258 416 PRINTS Mitochondrial carrier protein signature 100 113 IPR002067 GO:0055085
Lele38g0258 416 PRINTS Mitochondrial carrier protein signature 260 278 IPR002067 GO:0055085
Lele38g0258 416 PRINTS Mitochondrial carrier protein signature 326 348 IPR002067 GO:0055085
Lele38g0258 416 PRINTS Mitochondrial carrier protein signature 152 172 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0258 Lele-ChrLele38 2047920 2050607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0258 75 412 Chloroplast and Mitochondria Gene Families AT1G72820 74.194 0.0 506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0262 37 2075418 2076461 Lele38g0258 38 2047920 2050607 ECH
Lele38g0258 38 2047920 2050607 Lele38g0258 38 2047920 2050607 ECH
Lele38g0258 38 2047920 2050607 Lele39g1163 39 20329340 20330383 hybridization
Lele38g0258 38 2047920 2050607 Lele40g0242 40 1908313 1909356 hybridization