Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0257 ATGGACGCGCGAACAAATCATACTCCTCGCACTGTCGAAGAGGTTTTCAGGGATTTCAAGGGCCGAAGAGCTGGAATGATTAAAGCCCTTACAACGGGTGCAGCATTGGTTATGACCAGTGAAAGGCTCAATTTGGAATTGGTACTATCTGATTGGTCAAGCTATACACTCTCTTGTAAGATGGGCAGAGGTAACTTTGGCATAATCCGCAAGGCCTCGTTTGCAGCTGGAATTATCTACGTTGGTGTGGATTACAATTATTGTTTGATTAGAAAATTGGTTTCTATTGTATGGTTAAGGATATTTGCTTTTCTCTCTCTTATGTTGAAGTTTTTTACAACCAATGTGACCCTGGTTAGTAGTAATGTCCTTAGTTCTCCATTCATTTGCTCCTTTTCTGCAAACTTCTTTGCTAAGTTGCTGATGTAGAAGGAGAATTTGTGCTTGTATGGACTTCCTAGTGAGCAATGGGAAGTGAACTTACCTGCTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTTCTGGGAATTAATTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGCTATCTTTAGTTGCAGTCCATAGTGAAACATGGTTACTTTCCGTGGCCTTCTATTTTGGGGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTCAATATGATCAATGAGCTGCCAACAATTTTTGAAGTTGTTACTGGCGCAGCAAAGAAAGAAGTGAAGGAGAAGTCTTCAACTCATAGTGGCCGCAAATCTAAGTCTGGCTCTAAGGCGATAGCTTCAGAAATTCAGGGTAGACAATCGAAGGTTTTTCAACCAAAAGATGAGGATGAAGTTCCAGACGAGCAAGATGAAGATGATGAACATGGGGATACCATGTGCGGGGCATGCGGCGAGAATCATGGTACTGATGAATTCTGGATTTGCTGTGACAACTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATTACCCCTGCAAGGGCAGAGCATATCAAGCAATACAAATGCCCATCATGCAGTAACAAGAGAACGAGGGACGATGTGACCGACATAGCTTCACATGAGGTGGAGCTTGGAGGAGGCAGCAACGGGAGGGAAAGGGTCATCCCAGGAGTCAGCGTTATGGGAACAGGGAGAAGAATTAACAGAGTCGGGGTAGTTGAGATCTTGACATCAGCAGTCATCTATGACTTGACATCGTCCAACTTTGACACCACAGCCAAGCATTTGTATAGCTTCAACCGAGACGCAAAAAGCACAGGTTTATTGGAAGAAAACATTTATTTCCATGATGTATACAAGGGTACCAGCAATAACCAACTTTGA 1341 0.4362 MDARTNHTPRTVEEVFRDFKGRRAGMIKALTTGAALVMTSERLNLELVLSDWSSYTLSCKMGRGNFGIIRKASFAAGIIYVGVDYNYCLIRKLVSIVWLRIFAFLSLMLKFFTTNVTLVSSNVLSSPFICSFSANFFAKLLMXKENLCLYGLPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSETWLLSVAFYFGARFGFDRADRKRLFNMINELPTIFEVVTGAAKKEVKEKSSTHSGRKSKSGSKAIASEIQGRQSKVFQPKDEDEVPDEQDEDDEHGDTMCGACGENHGTDEFWICCDNCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRTRDDVTDIASHEVELGGGSNGRERVIPGVSVMGTGRRINRVGVVEILTSAVIYDLTSSNFDTTAKHLYSFNRDAKSTGLLEENIYFHDVYKGTSNNQL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0257 446 ProSiteProfiles Zinc finger PHD-type profile. 295 347 IPR019787 -
Lele38g0257 446 MobiDBLite consensus disorder prediction 244 299 - -
Lele38g0257 446 Pfam Alfin 137 238 IPR021998 GO:0006355|GO:0042393
Lele38g0257 446 SMART PHD_3 297 345 IPR001965 -
Lele38g0257 446 SUPERFAMILY FYVE/PHD zinc finger 286 348 IPR011011 -
Lele38g0257 446 Pfam PHD-finger 297 347 IPR019787 -
Lele38g0257 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 346 IPR013083 -
Lele38g0257 446 PANTHER CPG BINDING PROTEIN 8 350 IPR045104 GO:0006355|GO:0042393
Lele38g0257 446 FunFam PHD finger alfin-like protein 290 346 - -
Lele38g0257 446 MobiDBLite consensus disorder prediction 255 272 - -
Lele38g0257 446 ProSitePatterns Zinc finger PHD-type signature. 298 344 IPR019786 -
Lele38g0257 446 CDD PHD_AL_plant 298 347 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0257 Lele-ChrLele38 2038943 2047771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0257 136 350 Alfin-like Transcription Factor Family AT3G42790 70.233 7.57e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele38g0257 Alfin 3.8e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0261 37 2068189 2072223 Lele38g0257 38 2038943 2047771 ECH
Lele38g0257 38 2038943 2047771 Lele38g0257 38 2038943 2047771 ECH
Lele38g0257 38 2038943 2047771 Lele39g1164 39 20333245 20337273 hybridization
Lele38g0257 38 2038943 2047771 Lele40g0241 40 1899087 1902805 hybridization