Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0246 ATGTTTGACTTAGTTTCAAAAAAATGTAACAAGTCCTTAATTCTTAGGCCAAAAAAAAAAGGTTTCACAGACCTAATCGCAGAGAGGAGGCTTAGTTTTCTTCGGAGTTCACAGAAGCTCATCAACATGGCGACCCAAATGAGCAAAAAGCGAAAGTTTGTAGCCGATGGAGTTTTCTTTGCGGAGCTGAATGAAGTTTTGACTAGGGAGCTTGCAGAGGATGGGTACTCTGGTGTTGAAGTTAGGGTTACCCCCATGAGGACCGAGATCATCATTAGGGCGACTCGCACTCAGAACGTTCTCGGTGAGAAGGGAAGAAGAATTAGGGAACTGACATCTATTGTTCAGAAGCGTTTCAAGTTTCCTGAGAACAGTGTTGAGCTATATGCTGAGAAAGTCAATAACAGAGGGCTCTGTGCTATTGCACAGGCAGAGTCTCTGCGTTACAAGCTTCTTGGAGGGCTTGCTGTCAGAAGGGCTTGCTATGGTGTCCTTAGGTTTGTCATGGAAAGTGGTGCCAAAGGTTGTGAGGTTATTGTTAGTGGCAAGCTCAGGGCTCAGCGAGCCAAATCTATGAAATTCAAGGACGGATACATGATATCATCCGGTCAGCCCGTCAAGGAATATATCGACTCTGCTGTGAGGCACGTGCTCTTGAGACAGGGTGTTCTTGGTATCAAGGTGAAAATCATGCTTGATTGGGATCCTAAGGGCAAGCAAGGACCAACTAAACCTATTCCGGATGTTGTCACAATCCATCCACCCAAGGAAGAAGAAGATTACATTACCAGGCCCTTGCAACAGCCCGCAGTGCCCACCAACATAGAGATTGCAGCTGTCTAG 843 0.4614 MFDLVSKKCNKSLILRPKKKGFTDLIAERRLSFLRSSQKLINMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSIVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPIPDVVTIHPPKEEEDYITRPLQQPAVPTNIEIAAV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0246 280 Gene3D - 135 261 IPR036419 -
Lele38g0246 280 FunFam 40S ribosomal protein S3 43 134 - -
Lele38g0246 280 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 52 141 IPR009019 GO:0003723
Lele38g0246 280 SUPERFAMILY Ribosomal protein S3 C-terminal domain 135 233 IPR036419 -
Lele38g0246 280 ProSitePatterns Ribosomal protein S3 signature. 189 225 IPR018280 -
Lele38g0246 280 TIGRFAM uS3_euk_arch: ribosomal protein uS3 50 251 IPR005703 GO:0003735|GO:0006412|GO:0015935
Lele38g0246 280 Gene3D - 40 133 IPR015946 -
Lele38g0246 280 ProSiteProfiles Type-2 KH domain profile. 63 134 IPR004044 GO:0003723
Lele38g0246 280 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 48 240 - -
Lele38g0246 280 Pfam KH domain 62 135 IPR004044 GO:0003723
Lele38g0246 280 Pfam Ribosomal protein S3, C-terminal domain 148 230 IPR001351 GO:0003735|GO:0006412
Lele38g0246 280 CDD 40S_S3_KH 57 137 - -
Lele38g0246 280 FunFam 40S ribosomal protein S3 135 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0246 Lele-ChrLele38 1940267 1942275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0246 43 262 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 91.364 1.06e-150 419