Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0239 ATGCATACAAGTGCCACAAAGCTTTCCTCTCTGTCTGTCTCTCTCTCTCACTCTCCAATGGCTTGTAGGAGAGATGATAATAAGAGCGAAGAAGTGAAGTCATCAAATGAAAGTATGAAGAACGTATCTGTGAGCAAGGGAACTTGGACAGCAGAGGAAGATAGGAAACTAGCTGAGGTTATTTCAGTTCATGGGGCCAAGAAGTGGAAGTCCATAGCTGCCAAAGCGGGCCTTAATCGTGCTGGTACGAGTTGTAGGCTGAGATGGTTGAACTATGTTAGACCCACCATCAAGAGAGGAAACATATCAGAACAAGAAGAGGATTTGATACTTCGACTTCATAAACTCCTTGGAAACAGATGGTCTTTAATTGCGGGAAGGCTTCCTGGAAGAACGGACAATGAGATAAAGAACTATTGGAATTCTCACTTGTGCAAGAAGATAAAAAAACAAAGGGATGAGCAGCAATCAAGTGGTGGAAGTTCAACAAGACAAGAAGAAAAACAAAGACTTCTGTTGGAGAAAGCAGTTCCTGAAGAGAATTCTAAAGTGCGAGCTGATGAAGACACATCAAATAATAAAGAACCCATCAATTTTGATCAAGTGGATTATGGCTTCTTTGACATGTCCAATAGTAATGAAGAAGGTGAATTGAATCTGGAGTGGTGGGTTAATCAATTCCATGAACTAGATGAGGCCACTCTTGGACTCTTCTCATAA 720 0.4125 MHTSATKLSSLSVSLSHSPMACRRDDNKSEEVKSSNESMKNVSVSKGTWTAEEDRKLAEVISVHGAKKWKSIAAKAGLNRAGTSCRLRWLNYVRPTIKRGNISEQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKIKKQRDEQQSSGGSSTRQEEKQRLLLEKAVPEENSKVRADEDTSNNKEPINFDQVDYGFFDMSNSNEEGELNLEWWVNQFHELDEATLGLFS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0239 239 ProSiteProfiles Myb-like domain profile. 94 144 IPR001005 -
Lele38g0239 239 ProSiteProfiles Myb-like domain profile. 41 93 IPR001005 -
Lele38g0239 239 MobiDBLite consensus disorder prediction 173 197 - -
Lele38g0239 239 MobiDBLite consensus disorder prediction 173 194 - -
Lele38g0239 239 SMART sant 45 95 IPR001005 -
Lele38g0239 239 SMART sant 98 146 IPR001005 -
Lele38g0239 239 SUPERFAMILY Homeodomain-like 43 140 IPR009057 -
Lele38g0239 239 MobiDBLite consensus disorder prediction 1 47 - -
Lele38g0239 239 MobiDBLite consensus disorder prediction 21 35 - -
Lele38g0239 239 FunFam MYB-related transcription factor 45 98 - -
Lele38g0239 239 CDD SANT 103 144 IPR001005 -
Lele38g0239 239 FunFam Transcription factor TT2 102 173 - -
Lele38g0239 239 MobiDBLite consensus disorder prediction 1 17 - -
Lele38g0239 239 Gene3D - 46 98 - -
Lele38g0239 239 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 37 180 - -
Lele38g0239 239 Gene3D - 102 175 - -
Lele38g0239 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 93 IPR017930 -
Lele38g0239 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 148 IPR017930 -
Lele38g0239 239 CDD SANT 48 93 IPR001005 -
Lele38g0239 239 Pfam Myb-like DNA-binding domain 46 92 IPR001005 -
Lele38g0239 239 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0239 Lele-ChrLele38 1886257 1887153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0239 20 157 MYB Transcription Factor Family AT3G13540 53.623 1.78e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele38g0239 Myb_DNA-binding 1.4e-15 CL0123