Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0234 ATGATAACTAGTGAAACAAGTAGTGTAAGAAATAGATCTCCTTTCACAGCAATTCAATGGCAAGAACTTGAACAACAAGCTCTTATCTTTAAATACCTGGTCTCAGGCAGCCCCATCCCACCTGATCTCATTTACTCTGTCAAAAGAAGCCTAGAATCTTCTTCACTGTCTTCTTCTTCTTCAAGGCTCTTCCCCTTCCATCCAATTGGATGGGGGTGCCTAGAAATGGGATATGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAAGAAGCCTACCTGGACTCAAAATACTGTGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAATTTCTTCAACAGCAACAGCAGCAACTGGCATTTCAACAAACACGTCACAGCCAATCTCTTCACCATATAGTAACAGTAACAGAGGCCTTAGCATGAGTAATCATCCCAATCCACCCTCAACAACTTCTTCTTTCCCTTTCTCTCTATTGCCCTCTGATTCCCAACCTTATTCCCATATGTACCAGAATTCTTCTCTTAATCCCTTGTTCTACACTCATTCAACCTCATTTAGAACTCCTGATTCTGATTTTTCCCCTCAAAAAAGCAATACCCACCAGCTATTTTTAGACTCTGGATCTTATTTTAGGGATGAAGACTATAGGCATATTCATGGAATGAGGGAAGGTGTCGATGAGAGATCTTTCTTCCCAGAAGCCTCAGGGAGTATTAGGAACTTTCCTGATTTCTCCCAGTTCCAGAACACGAATGATAATACAACTCCAACAAGACAAGAAGAGCAACATTGCTTTGTTCTGGAAAGAGACTTCAAATCAGCAGGACAAATAAAACATGGGAATGAAACTGAGATGAACCAGAGATCATCACTTCATCATTTCTTTGGTGAATGGCCTCCAAAGAACACAGATTCATGGCTTGATCTTGCTTCAAATTCCAGAATCCCCTCTGGGAAAAAAGTTGTCTCAGATTTGCACAGTTTGTTGTTTGACTGGAAAGCATGGTGTTGTTACTCAATAGCTTCTGCTTCTTCTGAACATGTCCATGGACCAACACAGAAGAGAACATGTGCAATGAATAATAAGTAA 1143 0.4147 MITSETSSVRNRSPFTAIQWQELEQQALIFKYLVSGSPIPPDLIYSVKRSLESSSLSSSSSRLFPFHPIGWGCLEMGYGRKVDPEPGRCRRTDGKKWRCSKEAYLDSKYCERHMHRGKNRSRKPVEISSTATAATGISTNTSQPISSPYSNSNRGLSMSNHPNPPSTTSSFPFSLLPSDSQPYSHMYQNSSLNPLFYTHSTSFRTPDSDFSPQKSNTHQLFLDSGSYFRDEDYRHIHGMREGVDERSFFPEASGSIRNFPDFSQFQNTNDNTTPTRQEEQHCFVLERDFKSAGQIKHGNETEMNQRSSLHHFFGEWPPKNTDSWLDLASNSRIPSGKKVVSDLHSLLFDWKAWCCYSIASASSEHVHGPTQKRTCAMNNK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0234 380 Pfam QLQ 14 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele38g0234 380 ProSiteProfiles QLQ domain profile. 14 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele38g0234 380 PANTHER GROWTH-REGULATING FACTOR 5 13 327 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lele38g0234 380 SMART QLQ_2 13 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele38g0234 380 MobiDBLite consensus disorder prediction 124 174 - -
Lele38g0234 380 MobiDBLite consensus disorder prediction 115 174 - -
Lele38g0234 380 ProSiteProfiles WRC domain profile. 83 127 IPR014977 -
Lele38g0234 380 Pfam WRC 84 126 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0234 Lele-ChrLele38 1841431 1843016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0234 1 260 GRF Transcription Factor Family AT3G13960 42.088 5.33e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lele38g0234 WRC 4.4e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0234 38 1841431 1843016 Lele38g0234 38 1841431 1843016 ECH
Lele38g0234 38 1841431 1843016 Lele39g1191 39 20614944 20616198 hybridization
Lele38g0234 38 1841431 1843016 Lele40g0221 40 1719277 1721818 hybridization