Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0231 ATGCCCTGCAAAAGATTTCTACTTGGCTGCCTCAAGGCCAAGAATAATAAGCCATCCTCTGATCCATCTCTAGTCTCCAAGAAGACACCTTCAAGGAGACTTTCCCTCTCTGATTTGAGCAATGTTTCTTCAATCTCTATCATGAGTGATTTGTCCAACTCTGTTCTCGGATCAAATCTCCAAGTTTTCACCTTCAAGGAGCTTCAAGAGATCACTAACAACTTTAGCAGAAGCAGTGTTCTTGGAGAAGGTGGATTCGGCAAGGTGTATAAAGGCTTCATTGATGACAAGCTTAGGCCTGGATTATTAAAACCTCAAGTTGTGGCAGTTAAGGTTTTAGACTTAGATGGGAAACAAGGCCATAGGGAGTGGTTGGCAGAAGTAATAATTCTGGGGCAATTGAAGCATCCCAATCTGGTGAACCTAATTGGGTATTGCTGTAAAGATGAGAACAGGCTACTGGTATACGAATACATGGAAAGGGGCAATTTAGATGACAAGCTTTTCAAAGGCTCTTTAGCGGCGTTGAAATGGTTGACAAGAATCAAAATAGCAATTGGGGCAGCAAAAGGTCTTGCCTTTCTTCATGAAGAAGAGAAACCAGTCATATACAGAGATGTTAAAGCCTCAAACATACTATTAGATGCAGATTACAAGGCTAAACTCTCTGATTTTGGGCTAGCGATAGACGGTCCAGATGAAGATCAGAGCCACATCACAACTCGAGTTATGGGAACCCACGGCTATGCTGCTCCTGAGTATATTATGACAGGGCATTTGACAACAATGAGCGATGTATACAGCTATGGAGTGGTTCTATTAGAGCTACTTACAGGGAAGAGATCAGTGGACAAGAAACGACCTTCGAGAGAGCAGGATTTAGTAGAATGGGCGAGACCACTTCTGAAAGATACCATGAAACTCGAAAGAATAATGGATCCAAGACTTGAGGGACAATACTCTATTGAAGGAGCTAGAAAGGTGGCCGCTTTGGTTCGCCAATGTCTGAGTCATCAGGCCAAGACTCGGCCATCAATGCGAACCGTGGTCAAGTCATTAGAATCTATCATGAACCTGACCGACATTCCACTGAGCCACTTTGTCTATGTGGTTCCTAAAGAGGGTGAAATGGAAGGTCGGGTTCAGAGTAAAGTTGAAAATGGAGGGAAGAACGAGAACAGAGAGGAGAAGGTGGAGACGAAAGAGAAGGGCCGGCCGAGGAATCGGAAAAATCGAAGACGTAAACGACAGATTAGACCACTCAAGTCTCGTGCCGTTTACACTGATACGACATTATATAAATCTCTTGGTACTAGTTTGTATAATAATCAAATTAGTGTAATAAAATGA 1350 0.4296 MPCKRFLLGCLKAKNNKPSSDPSLVSKKTPSRRLSLSDLSNVSSISIMSDLSNSVLGSNLQVFTFKELQEITNNFSRSSVLGEGGFGKVYKGFIDDKLRPGLLKPQVVAVKVLDLDGKQGHREWLAEVIILGQLKHPNLVNLIGYCCKDENRLLVYEYMERGNLDDKLFKGSLAALKWLTRIKIAIGAAKGLAFLHEEEKPVIYRDVKASNILLDADYKAKLSDFGLAIDGPDEDQSHITTRVMGTHGYAAPEYIMTGHLTTMSDVYSYGVVLLELLTGKRSVDKKRPSREQDLVEWARPLLKDTMKLERIMDPRLEGQYSIEGARKVAALVRQCLSHQAKTRPSMRTVVKSLESIMNLTDIPLSHFVYVVPKEGEMEGRVQSKVENGGKNENREEKVETKEKGRPRNRKNRRRKRQIRPLKSRAVYTDTTLYKSLGTSLYNNQISVIK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0231 449 Gene3D Phosphorylase Kinase; domain 1 46 158 - -
Lele38g0231 449 SUPERFAMILY Protein kinase-like (PK-like) 50 354 IPR011009 -
Lele38g0231 449 CDD STKc_IRAK 81 356 - -
Lele38g0231 449 MobiDBLite consensus disorder prediction 378 423 - -
Lele38g0231 449 SMART serkin_6 75 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele38g0231 449 ProSitePatterns Protein kinases ATP-binding region signature. 81 111 IPR017441 GO:0005524
Lele38g0231 449 Gene3D Transferase(Phosphotransferase) domain 1 159 364 - -
Lele38g0231 449 MobiDBLite consensus disorder prediction 406 421 - -
Lele38g0231 449 PANTHER OS01G0588500 PROTEIN-RELATED 32 356 - -
Lele38g0231 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Lele38g0231 449 FunFam Serine/threonine-protein kinase PBS1 159 367 - -
Lele38g0231 449 MobiDBLite consensus disorder prediction 378 405 - -
Lele38g0231 449 Pfam Protein tyrosine and serine/threonine kinase 78 353 IPR001245 GO:0004672|GO:0006468
Lele38g0231 449 FunFam Serine/threonine-protein kinase BIK1 42 158 - -
Lele38g0231 449 ProSiteProfiles Protein kinase domain profile. 75 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0231 Lele-ChrLele38 1820612 1822340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0231 61 398 Glycoside Hydrolase AT3G07070 47.801 1.18e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele38g0231 PK_Tyr_Ser-Thr 8e-49 CL0016