Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0224 ATGCCGCCGATACCCATATCTATTCCTTTATCCCCAGATGTCGCCCATTTTGCAACCGCCAAGTGGATAAGATTCCTTATCTCCAAACGAACACTTCCATTTCATTCTTCTCCCCACAGTCGTTTAATCGGCGATCATCTGCCAAACCCACCCACCTCACAAATGAAAGCTCTGCTCCTAAGTAAACCTGCTACCCACTTCAATTTTTCTTCCAAACATACACATTCTTCTTCACCTCTTTTCACTTTTCCCACTCAATCTCTTTGCCTCCAACCAACCAAGACCACTTTATTCACCTTGCGCGCCATTCAAAATCAAGGACAGCAAATTTTCCAGGACACGCCTGCTCCCATCGACAACCATGATGAATCCTACGGCGAAGTTAAAGGTATTATCGGAAGCAGAGCCCTTGAAGGCGGCGCTGGCATGGAGTATTTGATCGAATGGAAAGATGGCCATGACCCCTCCTGGGTGCCCTCCAATTTTATCGCCAAAGACGTGGTGGCCGAGTACGAAACCCCGTGGTGGACCGCCGCAAAGAAAGCCAACGAATCCGCTCTCAAGCAGCTCATTGACTCCGACGACGGCAGGGACATCGACGCGGTCGACAGCGACGGGCGAACCGCGCTCCTCTTCGTATCGGGTCTGGGGTCGGAGCCGTGTGTGAGGGCGCTGGCCGAAGCGGGCGCAAATCTGGATCATCGAGATAATTCGGGGGGCCTGACGGCGCTTCACATGGCGGCCGGATACGTGAGGCCTGGCGTGGTCAAGCTTCTGGTAGATCTGGGGGCGGACGTTGAGGCGGAAGACGACAGGGGACGGACACCGTTAGAGCTAGCGAAGGAAATTCTGAACACAACACCGAAAGGGAACCCGATGCAGTTCGGGAGGAGGATAGGGTTGGAGAGCGTGATAAGGTCTCTGGAGGGAGCAATATACGAGTACGCAGAGGTGGAGGGGATATTGGAGGGGAGAGGGAAGGGGGAGAACCTGGAGTATTTGGTGAAATGGAAAGACGGAGGAGAGAACGAGTGGGTGAAGGCCAAGTTTGTCGGAGAAGATGTGGTGAGAGATTACGAAGCCGGACTGGAGTACGCGGTGGCGGAGAGAGTGATGGGAAGAAGAGAAGGCGACGATGGGAAACCAGAGTTTCTGGTAAAATGGGCCGACATGGAGCAGCCCACATGGGAGCCCGAAGATAATGTGGATCCTCAGCTCATACTGGAATTTGAACAGGCCCAAAATAGTAGCCCAAAGTGA 1260 0.5341 MPPIPISIPLSPDVAHFATAKWIRFLISKRTLPFHSSPHSRLIGDHLPNPPTSQMKALLLSKPATHFNFSSKHTHSSSPLFTFPTQSLCLQPTKTTLFTLRAIQNQGQQIFQDTPAPIDNHDESYGEVKGIIGSRALEGGAGMEYLIEWKDGHDPSWVPSNFIAKDVVAEYETPWWTAAKKANESALKQLIDSDDGRDIDAVDSDGRTALLFVSGLGSEPCVRALAEAGANLDHRDNSGGLTALHMAAGYVRPGVVKLLVDLGADVEAEDDRGRTPLELAKEILNTTPKGNPMQFGRRIGLESVIRSLEGAIYEYAEVEGILEGRGKGENLEYLVKWKDGGENEWVKAKFVGEDVVRDYEAGLEYAVAERVMGRREGDDGKPEFLVKWADMEQPTWEPEDNVDPQLILEFEQAQNSSPK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0224 419 Gene3D - 122 169 - -
Lele38g0224 419 Gene3D - 312 361 - -
Lele38g0224 419 CDD CD3_cpSRP43_like 363 411 - -
Lele38g0224 419 PANTHER MYOTROPHIN 141 293 - -
Lele38g0224 419 Pfam Chromo (CHRromatin Organisation MOdifier) domain 368 412 IPR023780 -
Lele38g0224 419 Gene3D - 362 414 - -
Lele38g0224 419 Pfam Ankyrin repeats (many copies) 225 280 IPR002110 GO:0005515
Lele38g0224 419 SUPERFAMILY Chromo domain-like 122 175 IPR016197 -
Lele38g0224 419 SUPERFAMILY Chromo domain-like 364 417 IPR016197 -
Lele38g0224 419 CDD CD2_cpSRP43_like 124 173 - -
Lele38g0224 419 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Lele38g0224 419 SMART chromo_7 365 415 IPR000953 -
Lele38g0224 419 SMART chromo_7 314 364 IPR000953 -
Lele38g0224 419 SMART chromo_7 124 176 IPR000953 -
Lele38g0224 419 ProSiteProfiles Ankyrin repeat profile. 239 271 IPR002110 GO:0005515
Lele38g0224 419 SUPERFAMILY Ankyrin repeat 170 282 IPR036770 -
Lele38g0224 419 SMART ANK_2a 205 234 IPR002110 GO:0005515
Lele38g0224 419 SMART ANK_2a 239 268 IPR002110 GO:0005515
Lele38g0224 419 SMART ANK_2a 170 201 IPR002110 GO:0005515
Lele38g0224 419 ProSiteProfiles Chromo and chromo shadow domain profile. 366 419 IPR000953 -
Lele38g0224 419 Gene3D - 170 311 IPR036770 -
Lele38g0224 419 ProSiteProfiles Chromo and chromo shadow domain profile. 316 345 IPR000953 -
Lele38g0224 419 SUPERFAMILY Chromo domain-like 314 361 IPR016197 -
Lele38g0224 419 ProSiteProfiles Ankyrin repeat region circular profile. 239 271 - -
Lele38g0224 419 CDD CD2_cpSRP43_like 314 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0224 Lele-ChrLele38 1756128 1757387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0224 193 280 CAMTA Transcription Factor Family AT5G09410 36.170 2.43e-07 51.2