Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0218 ATGTCGACTTTTTCTGATGCCGCGGCGGATAGTCAGAAGGCTGGCAAGCCGGCGGAGAGGTCCAATTTCTCCCAGACTTGTAATCTCTTAAGCCAGTTCTTGAAGGAGAAGCGTATTTCTGGTGCTCTGAGCCTTGGAATGTGCGGGAAAATTGAACCCAAAGGAAATCCAACTACTACGATGGACTTGTTAACTTCCCTAGAAAAATCTGATGATACCTCGAAACAAAGTCCTTCAGCTATGGATTTTCTTCCCCAGCTTGTAGAAAACCAGACTATTATTAGGTCACAGATCAAGGCAGAGCCTAAAACTCCCCAAATGGCAATATTTTACTCCGGGAAGGTGTTAATGTTTGACGAATTTCCGCCAGAGAAGGCGACGGAGATCATGGAGCTAGCCACAAAGCTAAGCTCTGATAATTCTGGGATCAGCAAAAATACCCCAAATGCTTCTGTAGCCCTTGAAAACCTCAACGAGGTTAAGGTGCCTCAAACAAGCACATCCCAAGAAGCTTCTCGCCCAGGCTCTGTCGCTTTTGGTTCAGATATGAGGTACCCGAGGAGAGCTTCGCTTTTAAAATTTCTGGAGAAAAGAAAAGAAAGGGTAATTGCAAGAGGACCATATCATATGCATGAAGGCGGTAGATGTGGAGGCCACCCTGAAGATCAATCTTGCAAACCCTTTGACCTTAACGCTTCAACCTTGTTGCAATTAAAGCCTCGTCTTGTTCATCCTTGCACCGAGTCTTTAGTTAAGATGTACTTGCTTGGTTTGCAGATTATAGTGCTTGTTCATCCACGCATATTAGTCTCGGCAAGGTTGAGAAATGAGGATCATCCATCCGGGCTGTTTAGTTATGGCTTCTCTCTTTCATATCCCCTCATCTGA 888 0.4505 MSTFSDAAADSQKAGKPAERSNFSQTCNLLSQFLKEKRISGALSLGMCGKIEPKGNPTTTMDLLTSLEKSDDTSKQSPSAMDFLPQLVENQTIIRSQIKAEPKTPQMAIFYSGKVLMFDEFPPEKATEIMELATKLSSDNSGISKNTPNASVALENLNEVKVPQTSTSQEASRPGSVAFGSDMRYPRRASLLKFLEKRKERVIARGPYHMHEGGRCGGHPEDQSCKPFDLNASTLLQLKPRLVHPCTESLVKMYLLGLQIIVLVHPRILVSARLRNEDHPSGLFSYGFSLSYPLI 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0218 295 MobiDBLite consensus disorder prediction 1 21 - -
Lele38g0218 295 Pfam Jas motif 187 208 IPR018467 -
Lele38g0218 295 ProSiteProfiles Tify domain profile. 100 135 IPR010399 -
Lele38g0218 295 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 12 210 IPR040390 -
Lele38g0218 295 SMART tify_2 100 135 IPR010399 -
Lele38g0218 295 Pfam tify domain 101 133 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0218 Lele-ChrLele38 1707192 1710672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0218 18 221 Tify Gene Family AT1G19180 31.556 3.45e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele38g0218 tify 1.5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0218 38 1707192 1710672 Lele38g0218 38 1707192 1710672 ECH
Lele38g0218 38 1707192 1710672 Lele39g1209 39 20777585 20778982 hybridization
Lele38g0218 38 1707192 1710672 Lele40g0206 40 1594679 1596077 hybridization