Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0217 ATGCAGAACCCCAGGTTGAAGCAGCAAGCTCTGATGCAACAAGCTCTTATGCAACAACAGTCTCTCTACCACCCTGGCCTCTTAGCTGCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCCGGTTTTGATCCAAGTTCTTGCCGCAGTGTGTATGTGGGGAATATTCATCCACAGGTAACTGAGTCCCTGCTTCAGGAACTTTTTACAAGTAATGGCCCGGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAGTCATCCTATGGATTCATTCACTATTTTGATCGTAGATCAGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCACCTATTTGGTCAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGGCAGAGAGAGGATACATCAGGTCATTTCAACATATTTGTTGGTGATCTTAGTCCTGAGGTTACTGATGCTACATTGTTTGCTTGCTTTTCTGTTTACCCCAGTTGCTCAGATGCAAGGGTTATGTGGGATCAGAAAACGGGACGATCAAGAGGGTTCGGATTTGTTTCATTCCGTAATCAACAGGATGCACAAAGTGCTATTAATGATTTGACTGGCAAGTGGCTTGGTAGTAGACAAATACGCTGTAACTGGGCAACAAAAGGTGCTGGTTCTAGTGAGGATAGACAGAGTTCAGACAGTAAAAGTGTGGTTGAACTAACAAATGGCTCATCTGAAGATGGTAAGGAGACGACTAACAGTGATGCCACAGAGAACAATCCTCAATATACTACCGTCTATGTGGGAAATCTTGCACCAGAGGTAACCCAGCTTGATCTCCATCGCCACTTCCATAATCTTGGGGCTGGTGCGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTCGGTTTTGTGAGGTACAGTACTCATGCTGAAACAGCAATGGCAATTCAGATGGGGAATACCCAGTCCTTTCTCTTGGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCTCCGGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCTGCGCCTCTGCCCGGTTTCTCTGCATCCGATCTTCTGGCCTATGAGCGTCAGCTAGCAATGAGCAAGGTGAGTGGTGTCCATGCCCTGATGCATCCCCAAGGGCAGCATCCTCTTAAACAGGCAGCACTTGGAGGAAGCCAGGCGATATATGACGGTGGGTTCCAGAATGTTGCTACACAACAAATGATGTACTACCAGTGA 1245 0.4699 MQNPRLKQQALMQQALMQQQSLYHPGLLAAPQIEPIPSGNLPPGFDPSSCRSVYVGNIHPQVTESLLQELFTSNGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSSEDRQSSDSKSVVELTNGSSEDGKETTNSDATENNPQYTTVYVGNLAPEVTQLDLHRHFHNLGAGAIEEVRVQRDKGFGFVRYSTHAETAMAIQMGNTQSFLLGKQIKCSWGSKPTPPGTASNPLPPPAAAPLPGFSASDLLAYERQLAMSKVSGVHALMHPQGQHPLKQAALGGSQAIYDGGFQNVATQQMMYYQ 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0217 414 CDD RRM1_TIA1_like 53 123 - -
Lele38g0217 414 Gene3D - 1 134 IPR012677 -
Lele38g0217 414 Gene3D - 234 336 IPR012677 -
Lele38g0217 414 SUPERFAMILY RNA-binding domain, RBD 250 340 IPR035979 GO:0003676
Lele38g0217 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Lele38g0217 414 SMART rrm1_1 137 210 IPR000504 GO:0003723
Lele38g0217 414 SMART rrm1_1 52 121 IPR000504 GO:0003723
Lele38g0217 414 SMART rrm1_1 258 328 IPR000504 GO:0003723
Lele38g0217 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 125 IPR000504 GO:0003723
Lele38g0217 414 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 49 335 - -
Lele38g0217 414 CDD RRM2_PUB1 137 211 - -
Lele38g0217 414 SUPERFAMILY RNA-binding domain, RBD 48 213 IPR035979 GO:0003676
Lele38g0217 414 FunFam oligouridylate-binding protein 1-like isoform X2 134 229 - -
Lele38g0217 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 332 IPR000504 GO:0003723
Lele38g0217 414 Gene3D - 135 215 IPR012677 -
Lele38g0217 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Lele38g0217 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 119 IPR000504 GO:0003723
Lele38g0217 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 323 IPR000504 GO:0003723
Lele38g0217 414 FunFam Oligouridylate-binding protein 1C 234 336 - -
Lele38g0217 414 MobiDBLite consensus disorder prediction 214 255 - -
Lele38g0217 414 CDD RRM3_TIA1_like 257 332 - -
Lele38g0217 414 FunFam oligouridylate-binding protein 1B-like isoform X2 1 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0217 Lele-ChrLele38 1702543 1707117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0217 46 333 Eukaryotic Initiation Factors Gene Family AT4G34110 29.043 4.62e-23 99.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0217 38 1702543 1707117 Lele38g0217 38 1702543 1707117 ECH
Lele38g0217 38 1702543 1707117 Lele39g1210 39 20780850 20785132 hybridization
Lele38g0217 38 1702543 1707117 Lele40g0205 40 1588044 1592496 hybridization