Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0194 ATGTTTCATCCTGGAGGAATTCCCAAACAAACTTGTAGTCTACTTGCTGTCACATGTGGCAAAAACGTTGAGCATGAGTTCAACAAGAAACTCACTCAGAATCAGCCCAAATATCCTTTTCCCGAGTTAACTTCTTCAGGGCGTCTGGAGGTTCAAACTCTAAACGATCCAGAAAAAGAACAGTTTCGTAAAGTTCTCGAGTCTTATCAACCAAATTTTGTATATTTACAAGGAGAGCAGCTTGCAAATGGTGAAGTTGGTTCTTTGGTCTGGCAAGGCGAAGAATTGGTCACCTCTGAAGCTATATCAGAGCTCTTTGGTCCCACATTGCCAACAGCTGTATACTTGGAAATCCCAAATGGGGAAAATTTGGCAGAAATTCTTCATCTTAAGGGAGTTGCATATGTGATTTATTGGAAAAGCACGTTTTCTTGTTATGCTGCTTGCCATTTTCGTCAAGCATTTCTTTCAGTGGTGCAGAGCTCTTCTACGCATACATGGGATGCCTTTCACCTTGCCCGTGCTTCGTTTGAGTTTTATTGTGTTCAAAACAATCAAGTCCTTCCTGGTGAGAAACATAATTCTAGTGACAATATAGGGCCACACCTTCTTGGAGATTGTCTTCAAATCAATATTGACCCTCCTGAGGTGTGTGAAGATGATGAGGAAAGTTCCTCAGGTACTCTTCCTGCTATAAAGATACATGATGATGAAGTTAAATTGAGATTTCTCATCTGTGGTTCACCTTCAATTGTGGATGAGTCACTATTGAGATCGTTGGAGGATGGACTCAAAGCACTCTTAACCATTGAAATACGGGGGAGCAAACTCCATGGCAAGTTTAGTGCTCCCCCACCACCTCTTCAAGCAGCCACTTTTTCTCGAGGAGTTGTGACCATGCGATGTGATATATCTACCTGTAGTTCAGCCCACATCTCACTTCTGGTGTCTGGTAGTGCTCAAACTTGCTTCAATGATCAGTTATTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAACTCGTTCGTGCCCAAATTAATGAGGGAAAACAACAGCATGTCTCTGAACCTCGTAGGTCTGCCTCAATTGCTTGTGGAGCAGCTGTATTTGAAGTTTGCATGAAGCTTCCTCTATGGGCTTCGCAGGTATTGAGACAGCTAGCTCCTGATATTACTTATCGAAGTTTAGTTGCACTTGGGATTGCGAGCATTCAGGGGTTGCCTATTGCTTCATTTGAGAAAGATGATGCTGAGCGCCTGCTTTTCTTTTATCAAAGTCCAGAGAAAGATAGTGATGCAGACAAAATCATTTTCAGCAGCCCTCCTAGTTGGTTGAAACCACCCCCTCCCACTAGAAAAAGGTGTGAGCCAAGTCAAGAGGCAAGCCCTGGCCTTCAAGATGGTGTTTTAACTGGGCAAGGTACTATTCAAAAAGTAGATGAAGAGGAAAAGGATACAAAAATGGTGAATGGAATTGGCACATCCTTAACTCCAGCTAGGCAGAGACTAAAAGTGTCTGCAATGAGGCCCATCCCTCACATTCATCGCCATAGAATGACGCTCTTTTCTGGGCCTTCTGAGACAGATGGTTATGACGGTGCCCAAGTTGAAGCTAGTTTACCACTTGTTGTCCCTGCAAAGCGCAGTAATACTGGTTCAAGTTCTGCAACACAGAGAAGGTCCTTTTCAGGCTCAGCTCTGTCTAAGCAGATTATTTCCTTGAACCCACTGCCCTTGAAAAAACACGGTTGTGGCAGAGGCCAGATCCAAACTTGCTCAGAGGAGGAATTTTTGAAAGATGTCATGGAGTTTCTAATGCTTCGAGGACATAGTAGATTAATTCCTCAAGGTGCGCTTGCTGAGTTTCCTGATGCCGTACTCAATGGGAAACGGCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTCCATGTTGGTAATGGCATCAATTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGCGTTGGAAATACACTCAAAAGGCATTATGAAACTTACCTTCTAGAATATGAATTAGCACATGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGCGCAGCCGGGGATTGGGTGAATTGTGGCATATGTGGCGAGTGGGCCCACTTTGGCTGCGACAGACGACAAGGTCTCGGTGCATTTAAGGATTATGCAAAAACAGATGGACTAGAATATATTTGTCCTCATTGTAGTGTAACAAATTTCAAGAAGAAACCCTCAGGCGTTGCTAATGGGTTTTCTCAGGGGTCAATGACATCAAAACCCCTTTGA 2343 0.4332 MFHPGGIPKQTCSLLAVTCGKNVEHEFNKKLTQNQPKYPFPELTSSGRLEVQTLNDPEKEQFRKVLESYQPNFVYLQGEQLANGEVGSLVWQGEELVTSEAISELFGPTLPTAVYLEIPNGENLAEILHLKGVAYVIYWKSTFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFEFYCVQNNQVLPGEKHNSSDNIGPHLLGDCLQINIDPPEVCEDDEESSSGTLPAIKIHDDEVKLRFLICGSPSIVDESLLRSLEDGLKALLTIEIRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIEKSQLVRAQINEGKQQHVSEPRRSASIACGAAVFEVCMKLPLWASQVLRQLAPDITYRSLVALGIASIQGLPIASFEKDDAERLLFFYQSPEKDSDADKIIFSSPPSWLKPPPPTRKRCEPSQEASPGLQDGVLTGQGTIQKVDEEEKDTKMVNGIGTSLTPARQRLKVSAMRPIPHIHRHRMTLFSGPSETDGYDGAQVEASLPLVVPAKRSNTGSSSATQRRSFSGSALSKQIISLNPLPLKKHGCGRGQIQTCSEEEFLKDVMEFLMLRGHSRLIPQGALAEFPDAVLNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKPSGVANGFSQGSMTSKPL 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0194 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 760 IPR013083 -
Lele38g0194 780 SUPERFAMILY ARID-like 593 708 IPR036431 GO:0003677
Lele38g0194 780 MobiDBLite consensus disorder prediction 435 473 - -
Lele38g0194 780 SMART bright_3 594 698 IPR001606 GO:0003677
Lele38g0194 780 CDD ARID 595 693 - -
Lele38g0194 780 CDD PHD_ARID4_like 703 754 - -
Lele38g0194 780 Pfam ARID/BRIGHT DNA binding domain 596 693 IPR001606 GO:0003677
Lele38g0194 780 Gene3D - 589 696 IPR036431 GO:0003677
Lele38g0194 780 ProSiteProfiles ARID domain profile. 593 697 IPR001606 GO:0003677
Lele38g0194 780 SUPERFAMILY FYVE/PHD zinc finger 696 760 IPR011011 -
Lele38g0194 780 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 775 IPR042293 -
Lele38g0194 780 SMART ARID_2 590 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0194 Lele-ChrLele38 1543367 1550975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0194 1 769 ARID Transcription Factor Family AT3G43240 60.285 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele38g0194 ARID 7.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0194 38 1543367 1550975 Lele39g1235 39 20953085 20959734 hybridization
Lele38g0194 38 1543367 1550975 Lele40g0185 40 1453405 1459980 hybridization