LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele38g0177	ATGGCTGTCGAACACGAAGACGATTTCAAGGACGAGAAGAATCCCCGTCCACTTGACGAAGATGACATCGCGCTGCTAAAAACCTATGGTTTGGGACCTTACTCCACAAGCATAAAAAAGGTGGAAAAGGAGATCAAAGAAATGGCAAAGAAAGTCAATGACTTGTGTGGAATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGGTGGCTAGGTGTACAAAAATAATAAATCCAAACTCTGAAGATGCAAAATATGTAATCAATGTTAAGCAGATCGCAAAGTTTGTTGTTGGGTTGGGTGACAAAGTTTCCCCCACTGACATAGAGGAAGGAATGCGTGTTGGGGTTGATAGAAACAAATATCAGATTCAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTTACAATGATGACAGTAGAGGAGAAACCTGATGTGACGTATAATGATGTTGGTGGTTGTAAGGAGCAGATTGAAAAGATGAGAGAAGTTGTGGAGCTTCCCATGCTTCACCCTGAGAAATTTGTCAAGCTTGGAATTGATCCTCCAAAAGGTGTTCTTTGCTATGGTCCACCAGGAACTGGCAAAACCCTTTTAGCCAGGGCCGTGGCTAATAGGACAGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTGGTTCAGAAATATGTTGGTGAGGGTGCTCGGATGGTTCGTGAACTATTTCAGATGGCGCGTTCAAAGAAGGCGTGCATTGTGTTTTTTGATGAAATTGATGCGATAGGAGGTGCTAGATTTGATGATGGCGTTGGTGGGGACAATGAAGTCCAACGAACAATGCTCGAAATTGTAAATCAACTTGATGGTTTTGATGCTCGAGGGAACATCAAGGTTTTGATGGCAACAAATAGGCCGGACACTCTAGATCCAGCACTTCTACGTCCTGGGAGGTTGGATCGGAAAGTTGAATTTGGGCTCCCTGACCTGGAGAGCAGAACTCAGATATTTAAGATCCACACAAGAACTATGAATTGTGAAAAGGACATCCGATTCGAACTTCTTGCTCGGCTTTGTCCAAATTCCACCGGAGCTGATATAAGGAGTGTATGCACTGAAGCTGGTATGTATGCTATTCGTGCCCGAAGGAAGACTGTGACGGAGAAAGACTTCCTTGATGCAGTAAACAAAGTCATCAAGGGATACCAAAAGTTCAGTGCAACTCCAAAGTATATGGTCTACAATTAA	1281	0.434	MAVEHEDDFKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEIDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCEKDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN	426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele38g0177	426	FunFam	26S protease regulatory subunit 7	339	410	-	-
	Lele38g0177	426	ProSitePatterns	AAA-protein family signature.	308	326	IPR003960	GO:0005524\|GO:0016887
	Lele38g0177	426	Gene3D	-	339	420	-	-
	Lele38g0177	426	Pfam	AAA+ lid domain	360	403	IPR041569	-
	Lele38g0177	426	PANTHER	26S PROTEASOME REGULATORY SUBUNIT	8	412	-	-
	Lele38g0177	426	CDD	AAA	171	338	-	-
	Lele38g0177	426	FunFam	26S protease regulatory subunit 7	33	157	-	-
	Lele38g0177	426	Gene3D	-	31	157	IPR012340	-
	Lele38g0177	426	Pfam	ATPase family associated with various cellular activities (AAA)	205	337	IPR003959	GO:0005524\|GO:0016887
	Lele38g0177	426	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	163	416	IPR027417	-
	Lele38g0177	426	FunFam	26S protease regulatory subunit 7	158	337	-	-
	Lele38g0177	426	Gene3D	-	158	337	IPR027417	-
	Lele38g0177	426	SMART	AAA_5	201	340	IPR003593	-
	Lele38g0177	426	TIGRFAM	26Sp45: 26S proteasome subunit P45 family	98	409	IPR005937	GO:0005737\|GO:0030163\|GO:0036402

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele38g0177	Lele-ChrLele38	1437478	1441508	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele38g0177	170	391	Calmodulin-binding Proteins	AT3G56690	37.220	6.67e-42	156

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele38g0177	38	1437478	1441508	Lele38g0177	38	1437478	1441508	ECH
	Lele38g0177	38	1437478	1441508	Lele39g1251	39	21059721	21063633	hybridization
	Lele38g0177	38	1437478	1441508	Lele40g0171	40	1359447	1363534	hybridization