Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0168 ATGGAATTGACGCCAGAAGCTGCAAATAAAGGCTATTCTGATCATAGCAGAGAAGAAGAATTAGTGGATGAGGAAGAGGACTTAGCTGAAACCAGTAATAAAGAAAGCAGCAGTAAGCAATTCTATCCCTTTTCTTCTCCTCCTCCTCCTCCACCTCCAAATCTATGGTTGGGGATGCTTCATCGGCATCACCAGCAGCAGCATCCTCACGATCATTATCATCATCAACAACAACAGTCTCCCGAGACCACAAACCCTTGTGATTCTCACAATTCGTCATCTGGGTTAGGGTTACACCATCAGGATGCACCTTCTAATTCCAATTCAGCCATTAACAATCCCAACAAGAAGCTAGACTTCATGGACCTATCTCTCGGGAACAAGGAAGAAGATGAAGCCAACAACAAACCTATCGAGAAAGAGCACATGTTTGATAAGGTTGTGACGCCGAGCGATGTCGGAAAACTGAACCGCCTCGTGATACCGAAACAACACGCCGAGAGGTACTTCCCGCTCGACTCTTCCTCTAACGAGAAAGGACTTCTCTTGAATTTCGAGGACCACAACGGCAAGCTATGGCGGTTCCGGTACTCTTACTGGAACAGTAGCCAGAGCTATGTAATGACCAAAGGCTGGAGCCGTTTTGTTAAAGAGAAGAAGCTCGACGCCGGCGACATTGTATCCTTCCAACGAGGCCTTGGTGAATTGTATAGACATAAGTTGTACATAGACTGGAGGCGCCGGCCGGATTACGCCGCTACCGATCATCGCCATGCCGCCGCAATTACACCGTTACTCCTCCCAAATCAGTATTCCATCAGATGGGACGGTAGATTATACTCAGTTCCTTCGGTGGCGCCACCGCCATCGCGACCACTAGAACATTTCCAGCAAGTGAATTACCCCTTTCAGCAACAACAACACCACCAACTACTTCAGTACCAGCGACAACAACAACATCATCATCACCAGCTCTATAGTGGAAGTCAAGGAAGCTATAATGAGCTGAATTTGGGATCTGGGTCGTCGCTTTACTACCTGAGGACGGCGTCAGGGTCGGTGGCGCCGGGAAATCGGAATTTAATGGAGCAGCGAGAGAGAGGCGGCAATGTAAGTCCGATGATCATCGATTCGGTTCCAGTAGTCCATGGTAAGGGGAGTTCTAGTAGTGGTAGAATTACTGATACAACAGCAAAGAAGCTTAGGCTATTTGGGGTGAATATGGAATGTTCTTCGTCGACGTCAAACATAGTAGGACATGTGCCAATGGCTGATTCATCACTTTCCTCACCAAATCTTCAGTATTTCAGAGAATCGACCCATCATGAAGAACAAGACCCACTTTCTTCATCATCATCGTCGTCAGCATCAAGGTTTGCAGATCAGAAGGGGAAAACTTCGGCGCTTTTTGATCTGAGCCCATCCTTTCAATACCGACACTAAAAAGCTTGCTTCTCTAAGGTTCCTGTTAGCCTTGTTGGGATGATGCTGTTCACAAACTCTGCTGCGCTTCTGCTTCTGCTTAGTGAGGCATTTTAG 1539 0.4724 MELTPEAANKGYSDHSREEELVDEEEDLAETSNKESSSKQFYPFSSPPPPPPPNLWLGMLHRHHQQQHPHDHYHHQQQQSPETTNPCDSHNSSSGLGLHHQDAPSNSNSAINNPNKKLDFMDLSLGNKEEDEANNKPIEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSSNEKGLLLNFEDHNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGELYRHKLYIDWRRRPDYAATDHRHAAAITPLLLPNQYSIRWDGRLYSVPSVAPPPSRPLEHFQQVNYPFQQQQHHQLLQYQRQQQHHHHQLYSGSQGSYNELNLGSGSSLYYLRTASGSVAPGNRNLMEQRERGGNVSPMIIDSVPVVHGKGSSSSGRITDTTAKKLRLFGVNMECSSSTSNIVGHVPMADSSLSSPNLQYFRESTHHEEQDPLSSSSSSSASRFADQKGKTSALFDLSPSFQYRHXKACFSKVPVSLVGMMLFTNSAALLLLLSEAF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0168 512 MobiDBLite consensus disorder prediction 78 115 - -
Lele38g0168 512 MobiDBLite consensus disorder prediction 429 458 - -
Lele38g0168 512 Gene3D - 138 259 IPR015300 -
Lele38g0168 512 SUPERFAMILY DNA-binding pseudobarrel domain 141 232 IPR015300 -
Lele38g0168 512 FunFam B3 domain-containing protein 137 258 - -
Lele38g0168 512 SMART B3_2 144 249 IPR003340 GO:0003677
Lele38g0168 512 MobiDBLite consensus disorder prediction 1 135 - -
Lele38g0168 512 Pfam B3 DNA binding domain 144 248 IPR003340 GO:0003677
Lele38g0168 512 CDD B3_DNA 142 231 IPR003340 GO:0003677
Lele38g0168 512 ProSiteProfiles B3 DNA-binding domain profile. 144 249 IPR003340 GO:0003677
Lele38g0168 512 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 61 441 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0168 Lele-ChrLele38 1362053 1364073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0168 122 413 RAV Transcription Factor Family AT2G46870 49.346 9.08e-80 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele38g0168 B3 5.8e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0168 38 1362053 1364073 Lele38g0168 38 1362053 1364073 ECH
Lele38g0168 38 1362053 1364073 Lele39g1268 39 21203075 21204547 hybridization
Lele38g0168 38 1362053 1364073 Lele40g0163 40 1272957 1277485 hybridization