LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele38g0166	ATGGATTTCGGGGGGGCCAACCAGCCGCGCCTGATCGGAGATTACATACTGGGACCGCAAATCGGGTCGGGTTCTTTTGCGGTGGTGTGGCACTCAAGGCATCGTCACTCCGGTTTGGAGGTTGCAGTTAAGGAGATTGACAAGAAACAGCTCAGCCCAAAAGTCAGTGAGAATCTGCTTAAAGAGATTTCTATTCTTAGCACCATCAATCACCCAAACATTATACGACTGTTCGAAGCAATCCAGACCAATGATAGGATTTACCTTATTTTGGAGTATTGTAATGGTGGTGACCTCGCTACTTACATTCATCGACGCGGAAAAGTTTCAGAATCCATTGCACGACATTTTATGAGACACTTAGCTGCGGGGTTGATGGTACTCCAAGAAAAGCACCTCATTCATAGAGATCTAAAACCACAGAACTTACTATTGTCTAGTACTGGAGGTAGACCACTTCTAAAAATAGGCGATTTTGGTTTTGCAAGGTCTCTCACACCCCAAGGGTTGGCAGACACGCTATGTGGTTCACCATTGTACATGGCTCCAGAGATAATTCAAAATCAGAAGTATGATGCCAAGGCTGATTTATGGAGCGTTGGAGCCATATTGTTCCAGCTAGTGACTGGGAGGCCACCATTTGATGGAAATAGTCAATTGCAGCTTTTTCAGAACATTTTAACATCCACTGAACTGCGGTTCCCACAAGAGGCTTTCAATGAGCTACATCCAGACTGTTTGGATCTTTGCAGAAGCCTCTTACGTCTAAACCCAGTTGAGCGATTGACATTCAAAGAATTCTTCGATCACAATTTCCTAAAGGAGCCCAGGTCAATTGTGAATGTTGAACGGTCTTCTATACAACCACCGGAAAGATCAATGGTCCAGCAATATGCTAGTATCTCAACATCAGACAAAGGGCCTCATTTGCATTCTGGTCATCATCTTGAGACATCAGTAGATGACCCAGTGGTAATCAGTTCTGGCATCAATGAGACCGTGCTGTTACAAAGAAAGCATAGTGGGAATGCTGCTGACACCAAGAGTGTTAAAGGCATCATTTCAACAACTACTTGTGACAAGCAGGGACTTGGTAATGTTGCTCAATTGTCAGACCAACCTCATGCTTCTCATTTGATGGAATCCATTGAGAAAGACTATGTCCTAGTCAATCCTCACTTTTCATCATTGGAGGCTTTCTCCGATTACTTTGAGGCATCTGTGCAAGATAATATCACAAGCAGGGTTTCAATCTGTCCTTCAAAGAGGGTTGACGTTGAAGCTGGAGTTGCAAAGCAAACAAAGGATTTAGCCTCTTGCTATGTTGGTGGAGAAGAAAGGACAAAAGGTGATAAACTTGAGGCATCCTCTGTATTTGCTGTCCTGAGGAAAGAGCAGGGGGCATCCTCAAAGCAGCCTTCGAGTAGGTTAGATTTGTTGGATCAATATGTGCGGATTCTCTCAGAGCTTTCGCAAGAAAAATATAATGCAGGACTGCATTTAGAATCATTTGCGGTCGAACTGGTGGTTTTGGCTATATGGAAAAAAGCTATTGAAATTTGTGACTCTTGGCTGTCCTCCATCACTGAGGGCAAGTTGCCTGGAAGCACTTCAGGGAAGGAATCCACAATCTCATGCGGAGATGAAAGCATATCACAACCCACGCTAGAGAAAATAGATTTTAGTGATCCTTCTGCTGTGTCCTTGTGGACCAAGAAAGGATTTATTTTTGCAGTTGATCATGCTGAGAAACTTTCATGCCTTATTCAAAATATGGATGGTGCAGCTGAGATGCCAGATGCAATGGAAATCATATTTCAAAAAGCGCTATCAATCGGCACAAGTGGTGCTGTAGATGAGTATATGGAAGATAGAGGTAAGGCAGCTGTATCATACTCAAAAGCGATGCTTCTACTTTCATTCCTTGTGAACGAAGCAGTTCAACTTCCCCTGAACCCACCATTCTCATTAACTCCTGCTAATGAGAAGAGAATTTTAGAGTATATTTTCAACCTGCAGTCGCATCAACTTCAGTCTTCTTCATCAGAGCCTTCCAAGGCATCTGACATTCTTTCATGA	2079	0.4334	MDFGGANQPRLIGDYILGPQIGSGSFAVVWHSRHRHSGLEVAVKEIDKKQLSPKVSENLLKEISILSTINHPNIIRLFEAIQTNDRIYLILEYCNGGDLATYIHRRGKVSESIARHFMRHLAAGLMVLQEKHLIHRDLKPQNLLLSSTGGRPLLKIGDFGFARSLTPQGLADTLCGSPLYMAPEIIQNQKYDAKADLWSVGAILFQLVTGRPPFDGNSQLQLFQNILTSTELRFPQEAFNELHPDCLDLCRSLLRLNPVERLTFKEFFDHNFLKEPRSIVNVERSSIQPPERSMVQQYASISTSDKGPHLHSGHHLETSVDDPVVISSGINETVLLQRKHSGNAADTKSVKGIISTTTCDKQGLGNVAQLSDQPHASHLMESIEKDYVLVNPHFSSLEAFSDYFEASVQDNITSRVSICPSKRVDVEAGVAKQTKDLASCYVGGEERTKGDKLEASSVFAVLRKEQGASSKQPSSRLDLLDQYVRILSELSQEKYNAGLHLESFAVELVVLAIWKKAIEICDSWLSSITEGKLPGSTSGKESTISCGDESISQPTLEKIDFSDPSAVSLWTKKGFIFAVDHAEKLSCLIQNMDGAAEMPDAMEIIFQKALSIGTSGAVDEYMEDRGKAAVSYSKAMLLLSFLVNEAVQLPLNPPFSLTPANEKRILEYIFNLQSHQLQSSSSEPSKASDILS	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele38g0166	692	FunFam	Serine/threonine-protein kinase ATG1	7	315	-	-
	Lele38g0166	692	PANTHER	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	8	534	IPR045269	GO:0004674\|GO:0006914
	Lele38g0166	692	ProSiteProfiles	Protein kinase domain profile.	15	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele38g0166	692	Pfam	Protein kinase domain	18	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele38g0166	692	CDD	STKc_ATG1_ULK_like	21	272	-	-
	Lele38g0166	692	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
	Lele38g0166	692	Gene3D	Transferase(Phosphotransferase) domain 1	6	343	-	-
	Lele38g0166	692	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	133	145	IPR008271	GO:0004672\|GO:0006468
	Lele38g0166	692	FunFam	Non-specific serine/threonine protein kinase	4	95	-	-
	Lele38g0166	692	SMART	serkin_6	15	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele38g0166	692	SUPERFAMILY	Protein kinase-like (PK-like)	11	309	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele38g0166	Lele-ChrLele38	1334162	1339295	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele38g0166	5	276	CBL-interacting serine-threonine protein kinases	AT2G30360	38.129	1.79e-57	199

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-3	Lele38g0166		Pkinase	1.4e-72	CL0016