LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele38g0152	ATGGAGGTCGGGTTGGAGACAGAGGAGGACCAGAGCAAGCAGATGGTACGCTGGGAGAAGTTTTTACCTCGGATGGTGCTTAGAGTATTACTTGTGGAAGCGGATGACTCTACTCGTCATGTTATCGCGGCCCTTCTCCGGAAATGCAGTTACAAAGTTGCTGCAGTTCCTGATGGACTAAAAGCATGGGAGACGCTGAAGAGGAAAACTTCTGAAATAGATCTCATATTAACAGAAGTGGAGTTGCCATCAATATCTGGATTTGCACTTCTTACTTTGATCATGGAACATGATGTGTGCAAGAACATTCCTGTCATAATGATGTCTACTCAGGATTCAGTTAGTTTGGCATTGAAATGCATTTTGAAAGGTGCAGCTGATTTTCTCATAAAACCTGTTCGGAGAAATGAGCTGAGGAACTTGTGGCAACATGTATGGAGAAGACATGAGATTGACCGGCAACCTCAAACTATACCATTTCCACAGAAAAACCTGGAAACTACTTCTGAAAACAATGCTGCCAGCAATCATTCAAGTGGATCTGTGGCTTCCACACAGAAAAATAATGGACGCCCTGAGAAAGGGAGTGAGGCCCAAAGCACTTGTACATCGCCATTTTTGGAAGCTGAGAGTGCATACATGCAAAATATGATGGATACATCCCATATGAAGAGTTCTTCAAATTTGAGCAACAATGACACGGTACAGAATGAAGACTCAACCATATTGGGATTGGAAAAGCAATCAATTAAGCATAACAGTGAAACTGGAGATAAGTCGGGGGCATTGCTATCACCGTCTGCAAAGTGTGACAAGAATTTTAAATCAACAGATTTTGGGCAGGATCGAGGATATGATAGTGCTGAAAAGGAGAATCATGTGGAAGTTCTTAGACCAGAGTCAAGCAGAGAAAATCCTAACATGGATGCAGAGATACATGGATGCAACAATGAACTGGTAGAACCATCTAGAGGAGTTATTGATTTGATTGCCACATTCAAGAATCTACCAGTAAAGAATGATGAAAGTTGTAACCTCAGCGGTAGTGGTGCAAAGAAGTTTGATTTTGATCCACGATTGGAGCTTTCTCTAAGACGAGATTTTCCTGGCAGCTTATCTAAACAAGCAATTGATGAAAAACAGGCCTTGAACCACCATTCAAAGGCTTCTGCCTTTTCTTGGTATAGCGGGGGTAAGTTTCCATCACCATTTGGAAGCTCTGCTAAAGCAGGTGGCCACAATGGGAATTCTCATGAAGCCAGTAGATCATCTAGAAATACCGTTGATTCTTCCTGGCAATATGGTGGCACGAATCATAGTTCAGCGAATATGGCAACCCTCGCCATTGGTCAATCTGGTCAAGTTGAAGTACGGTCGACAAACAGTCAACTTGGATCATTTCCTCCTACTGGTGTTGCTTCTGATAACAAGCCTACTGAATCTGAAACTGTTTTTCTATCTACGTTCTTCACACAATCTGATGTTCGTTCCAGGAGTCCTAAACCTAACTGCCCGAAAGAGAGTTCTCCTCCCATTCTCACAAGTAACTCTTTCCAGTCCAATCCTGGAAGTCACAATTCGGAACAACGTTTTCACTGTTTTGATGATGCCACTTGTACTTCTCGTGATAAAACTGCGAATGAAAAAAGCAATTTGGATCCTGCAAGGCAACATTCTTCTGCTGTTGATCAGAGCACTAGAAATGTCTCATGCCATGACCCTGCAAATCAGAACAATAACGATGATAATAATACAAGCGCATATAAACTCGCATGCAAAATTGATGGAAATGCTTCTTCAGCTTCAGTAGTTGAGAGCAACCCTGAAAATTATGGGGACAGTGGCCATCATAATAATGATGGATATGGAGGGACATATTCTCATTGTCCCACCCACAGAGAAGCTGCTCTAACAAAGTTTCGAATGAAGCGGAAAGAGAGGTGCTACGAGAAAAAGGTCCGATATCTAAGCAGAAAAAAACTAGCAGAGCAGCGTCCTCGGGTTAAAGGGCAGTTTGTACGCCAAGTACATAATAACGATCATGCTGTTGCTGATGTTGATGGTGGTTCCTGA	2073	0.425	MEVGLETEEDQSKQMVRWEKFLPRMVLRVLLVEADDSTRHVIAALLRKCSYKVAAVPDGLKAWETLKRKTSEIDLILTEVELPSISGFALLTLIMEHDVCKNIPVIMMSTQDSVSLALKCILKGAADFLIKPVRRNELRNLWQHVWRRHEIDRQPQTIPFPQKNLETTSENNAASNHSSGSVASTQKNNGRPEKGSEAQSTCTSPFLEAESAYMQNMMDTSHMKSSSNLSNNDTVQNEDSTILGLEKQSIKHNSETGDKSGALLSPSAKCDKNFKSTDFGQDRGYDSAEKENHVEVLRPESSRENPNMDAEIHGCNNELVEPSRGVIDLIATFKNLPVKNDESCNLSGSGAKKFDFDPRLELSLRRDFPGSLSKQAIDEKQALNHHSKASAFSWYSGGKFPSPFGSSAKAGGHNGNSHEASRSSRNTVDSSWQYGGTNHSSANMATLAIGQSGQVEVRSTNSQLGSFPPTGVASDNKPTESETVFLSTFFTQSDVRSRSPKPNCPKESSPPILTSNSFQSNPGSHNSEQRFHCFDDATCTSRDKTANEKSNLDPARQHSSAVDQSTRNVSCHDPANQNNNDDNNTSAYKLACKIDGNASSASVVESNPENYGDSGHHNNDGYGGTYSHCPTHREAALTKFRMKRKERCYEKKVRYLSRKKLAEQRPRVKGQFVRQVHNNDHAVADVDGGS	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele38g0152	690	MobiDBLite	consensus disorder prediction	406	437	-	-
	Lele38g0152	690	SMART	REC_2	27	142	IPR001789	GO:0000160
	Lele38g0152	690	MobiDBLite	consensus disorder prediction	409	437	-	-
	Lele38g0152	690	MobiDBLite	consensus disorder prediction	157	203	-	-
	Lele38g0152	690	MobiDBLite	consensus disorder prediction	552	584	-	-
	Lele38g0152	690	Gene3D	-	25	236	-	-
	Lele38g0152	690	SUPERFAMILY	CheY-like	27	157	IPR011006	-
	Lele38g0152	690	MobiDBLite	consensus disorder prediction	544	584	-	-
	Lele38g0152	690	MobiDBLite	consensus disorder prediction	453	478	-	-
	Lele38g0152	690	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	27	293	IPR045279	GO:0009736
	Lele38g0152	690	CDD	psREC_PRR	29	132	-	-
	Lele38g0152	690	ProSiteProfiles	CCT domain profile.	633	675	IPR010402	GO:0005515
	Lele38g0152	690	MobiDBLite	consensus disorder prediction	494	528	-	-
	Lele38g0152	690	MobiDBLite	consensus disorder prediction	494	529	-	-
	Lele38g0152	690	Pfam	CCT motif	633	675	IPR010402	GO:0005515
	Lele38g0152	690	ProSiteProfiles	Response regulatory domain profile.	28	146	IPR001789	GO:0000160
	Lele38g0152	690	MobiDBLite	consensus disorder prediction	281	307	-	-
	Lele38g0152	690	Pfam	Response regulator receiver domain	29	140	IPR001789	GO:0000160
	Lele38g0152	690	MobiDBLite	consensus disorder prediction	156	203	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele38g0152	Lele-ChrLele38	1211449	1216575	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele38g0152	618	678	Response Regulator Gene Family	AT5G24470	71.429	3.66e-20	92.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Pseudo ARR-B	Lele38g0152		Response_reg	4.6e-21	CL0304