Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0144 ATGGCGGGAGGGCAATACAACGACACAACACTGACAAAAATCTTCGTGGGAGGGCTTGCTTGGGAGACTCAAAGGGACACAATGAGCAGATATTTTGAGCAGTTTGGAGAGATCCTTGAAGCTGTTGTTATCACAGACAAGAACACAGGAAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCAGAAGCAGCCTTGCGAGCGTGCCAGAACCCTTCTCCAGTTATTGATGGAAGAAGAGCAAACTGCAATCTTGCTTCTTTTGGTGCAAACAAGAATCGGTCTCCAACTCCTCAACTTGGTACGGGAAGGTTCAGAGAAGCAGCTGGAATGGTGGGCCTGCCAGCCGCATATCATGGCTCTTCCTCCTCAATTTTCCGTCAACCCACAGGACAATACACATTTCCATATTCACCTTACGGTTACAGATTCTCTGGATATTCACAAGACTCCGTATATCCCTTGAACTATTACAATGTGTATGGAGGTCAACAATTTTCACCATATTATTCAACCAGTTACATTTACCCATTCTGTACTCCTCAATATGCACGGAGTGGCCATCAGGCTCATGGTTTTGGAGTTCATCAGTATCATCCTCAAATGGTAAACTTCCCAGTTCTTCATCAACAGCACTATGGCACTGTCTCTCCTCCACTTCTGCCATTTCCTTCTTCAATGCCAATGCCAACTACTAGCGAAGTGGCAGCAGAGGAGCAGACAGCATCAGTAGGGCCAGCATCCAATGACAAAGAATCATATAATGGGTTCAAAAAGATTGGTGTTGTAATCTTTGAAGAACCCTTTAATTGCTTAGAAATGTCGACCGGAGAGATTGCTTGTACTTACGCGGTTCTCATCCTCTTTGATGATAACATTCCAGTCACTGCCGAGAAGATATCGACCTTGGTGAAAGCTGCAAATGTTGATGTTGAATCTTATTGGCCAAGCTTGTTCGCTAAACTTGCTGAGAAGAGAGACATTGGGGATTTGATATTGAATGCTGGAGGGGGTGGGGCTCCAGTTGCCGTTGCAGCCCCAGCTGCAGCTGCGGCTGGTGGCGGCGGCGCAGCCGCTCCTCCTCCTGCTGAGGAGAAGAAGAAGGAAGAACCCCAAGAAGAGAGCGATGATGACATGGGATTCAGCTTGTTTGATTAG 1161 0.466 MAGGQYNDTTLTKIFVGGLAWETQRDTMSRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAALRACQNPSPVIDGRRANCNLASFGANKNRSPTPQLGTGRFREAAGMVGLPAAYHGSSSSIFRQPTGQYTFPYSPYGYRFSGYSQDSVYPLNYYNVYGGQQFSPYYSTSYIYPFCTPQYARSGHQAHGFGVHQYHPQMVNFPVLHQQHYGTVSPPLLPFPSSMPMPTTSEVAAEEQTASVGPASNDKESYNGFKKIGVVIFEEPFNCLEMSTGEIACTYAVLILFDDNIPVTAEKISTLVKAANVDVESYWPSLFAKLAEKRDIGDLILNAGGGGAPVAVAAPAAAAAGGGGAAAPPPAEEKKKEEPQEESDDDMGFSLFD 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0144 386 MobiDBLite consensus disorder prediction 353 386 - -
Lele38g0144 386 FunFam 60S acidic ribosomal protein P1 275 337 - -
Lele38g0144 386 CDD RRM_RBM24_RBM38_like 12 87 - -
Lele38g0144 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 89 IPR000504 GO:0003723
Lele38g0144 386 SUPERFAMILY RNA-binding domain, RBD 11 99 IPR035979 GO:0003676
Lele38g0144 386 Gene3D - 275 337 IPR038716 -
Lele38g0144 386 CDD Ribosomal_P1 279 335 - -
Lele38g0144 386 Pfam 60s Acidic ribosomal protein 296 385 - -
Lele38g0144 386 SMART rrm1_1 13 85 IPR000504 GO:0003723
Lele38g0144 386 PANTHER BOULE-RELATED 4 243 IPR037366 -
Lele38g0144 386 Hamap 50S ribosomal protein L12 [rpl12]. 280 386 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lele38g0144 386 Gene3D - 3 104 IPR012677 -
Lele38g0144 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 71 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0144 Lele-ChrLele38 1172542 1181247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0144 275 386 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 58.407 3.03e-36 126