Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele38g0140 | ATGTCAGAAGGTGCGGAAGTTGATGAGCGTGTGGACTTTGATGAGGAAAACTACATGGAAGAGATGGAAGATGATGTGGAAGAACAAATATATGATGAGGGAGTGGATGGAGATGGTGATGAAAATGAAGAGAATGTTGAGGAACATGAATATGAAGATTCAGTAGCAGAATCTTGTGGGAAAGACCAATATCCCGAAGCAGATGGAAGTGACGTTGCGACTGACTCTGTGGAAAATGAGCAAAAGCCATTTTCTATTGATGAAAATGAGAAGGAGAAACATGATGAACTTCTCGCGCTTCCTCCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATACATGTGAAGATGATTTAAGAGAAATGTGCGAGCAAATCGGTGATATTCTTGAGGTGAGACTTATGAAAGATAGGGATACTGGAGATGTTAAAGGCTATGCTTTTGTGGCATTTAAAACAAAAGAGATTGCACAAAAGGCCATTGAAGAGTTGCATAACAAGGAATTTAAGGGCAAAACTTTAAGGTGTTCCGTGTCTGAAACAAAACACAGATTGTTTATTGGTAATGTTCCAAAAAACTGGACAGAGGATGAGTTCAGGAAAGTCATCATGGGCGTTGGTCCTGGAGTTGAAAATATTGAGCTGATAAAGGACCCCCAAAATGCAAGCAGGAACCGTGGGTTTGCTTTTGTATTGTATTATAATAATGCCTGTGCTGATTATTCTCGGAAAAAGATGTCAAGTGCAAACTTTAAGCTGGATGGCAATACCCCCACAGTCACTTGGGCAGATCCAAAGAATGCACCTGATCATTCGGCTTCCTCACAGGTAGAGATGCTTGATTGCTATTCACTGGAGAGTTCAATCTTGGACAAGAAATTGGGGTTGAAGATGGAAGCATCCAAGCATTCCTCCACATCAAGTATCTCCACCTCATTAGCAAAGATCACTGCAGATCGATGGAAACTTACAGAGGCTGCCTTCAAATGGTGCAGGGATGAAGGGGGTTCAGGTGAAAAAAAAATGGTAGGGAAGGAGAAAACACTGAGTATTAGGTGA | 1065 | 0.4169 | MSEGAEVDERVDFDEENYMEEMEDDVEEQIYDEGVDGDGDENEENVEEHEYEDSVAESCGKDQYPEADGSDVATDSVENEQKPFSIDENEKEKHDELLALPPHGSEVFIGGLPRDTCEDDLREMCEQIGDILEVRLMKDRDTGDVKGYAFVAFKTKEIAQKAIEELHNKEFKGKTLRCSVSETKHRLFIGNVPKNWTEDEFRKVIMGVGPGVENIELIKDPQNASRNRGFAFVLYYNNACADYSRKKMSSANFKLDGNTPTVTWADPKNAPDHSASSQVEMLDCYSLESSILDKKLGLKMEASKHSSTSSISTSLAKITADRWKLTEAAFKWCRDEGGSGEKKMVGKEKTLSIR | 354 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele38g0140 | 354 | Gene3D | - | 10 | 184 | IPR012677 | - | |
Lele38g0140 | 354 | SMART | rrm1_1 | 106 | 179 | IPR000504 | GO:0003723 | |
Lele38g0140 | 354 | SMART | rrm1_1 | 186 | 263 | IPR000504 | GO:0003723 | |
Lele38g0140 | 354 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 186 | 266 | - | - | |
Lele38g0140 | 354 | SUPERFAMILY | RNA-binding domain, RBD | 102 | 209 | IPR035979 | GO:0003676 | |
Lele38g0140 | 354 | Gene3D | - | 185 | 266 | IPR012677 | - | |
Lele38g0140 | 354 | MobiDBLite | consensus disorder prediction | 8 | 51 | - | - | |
Lele38g0140 | 354 | FunFam | Heterogeneous nuclear ribonucleoprotein Q isoform A | 8 | 185 | - | - | |
Lele38g0140 | 354 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 187 | 253 | IPR000504 | GO:0003723 | |
Lele38g0140 | 354 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 107 | 177 | IPR000504 | GO:0003723 | |
Lele38g0140 | 354 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 13 | 295 | - | - | |
Lele38g0140 | 354 | SUPERFAMILY | RNA-binding domain, RBD | 186 | 272 | IPR035979 | GO:0003676 | |
Lele38g0140 | 354 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 185 | 267 | IPR000504 | GO:0003723 | |
Lele38g0140 | 354 | CDD | RRM_SF | 107 | 179 | - | - | |
Lele38g0140 | 354 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 105 | 183 | IPR000504 | GO:0003723 | |
Lele38g0140 | 354 | MobiDBLite | consensus disorder prediction | 1 | 90 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele38g0140 | Lele-ChrLele38 | 1117319 | 1119866 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele38g0140 | 86 | 238 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 30.719 | 9.15e-10 | 58.2 |