Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0140 ATGTCAGAAGGTGCGGAAGTTGATGAGCGTGTGGACTTTGATGAGGAAAACTACATGGAAGAGATGGAAGATGATGTGGAAGAACAAATATATGATGAGGGAGTGGATGGAGATGGTGATGAAAATGAAGAGAATGTTGAGGAACATGAATATGAAGATTCAGTAGCAGAATCTTGTGGGAAAGACCAATATCCCGAAGCAGATGGAAGTGACGTTGCGACTGACTCTGTGGAAAATGAGCAAAAGCCATTTTCTATTGATGAAAATGAGAAGGAGAAACATGATGAACTTCTCGCGCTTCCTCCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATACATGTGAAGATGATTTAAGAGAAATGTGCGAGCAAATCGGTGATATTCTTGAGGTGAGACTTATGAAAGATAGGGATACTGGAGATGTTAAAGGCTATGCTTTTGTGGCATTTAAAACAAAAGAGATTGCACAAAAGGCCATTGAAGAGTTGCATAACAAGGAATTTAAGGGCAAAACTTTAAGGTGTTCCGTGTCTGAAACAAAACACAGATTGTTTATTGGTAATGTTCCAAAAAACTGGACAGAGGATGAGTTCAGGAAAGTCATCATGGGCGTTGGTCCTGGAGTTGAAAATATTGAGCTGATAAAGGACCCCCAAAATGCAAGCAGGAACCGTGGGTTTGCTTTTGTATTGTATTATAATAATGCCTGTGCTGATTATTCTCGGAAAAAGATGTCAAGTGCAAACTTTAAGCTGGATGGCAATACCCCCACAGTCACTTGGGCAGATCCAAAGAATGCACCTGATCATTCGGCTTCCTCACAGGTAGAGATGCTTGATTGCTATTCACTGGAGAGTTCAATCTTGGACAAGAAATTGGGGTTGAAGATGGAAGCATCCAAGCATTCCTCCACATCAAGTATCTCCACCTCATTAGCAAAGATCACTGCAGATCGATGGAAACTTACAGAGGCTGCCTTCAAATGGTGCAGGGATGAAGGGGGTTCAGGTGAAAAAAAAATGGTAGGGAAGGAGAAAACACTGAGTATTAGGTGA 1065 0.4169 MSEGAEVDERVDFDEENYMEEMEDDVEEQIYDEGVDGDGDENEENVEEHEYEDSVAESCGKDQYPEADGSDVATDSVENEQKPFSIDENEKEKHDELLALPPHGSEVFIGGLPRDTCEDDLREMCEQIGDILEVRLMKDRDTGDVKGYAFVAFKTKEIAQKAIEELHNKEFKGKTLRCSVSETKHRLFIGNVPKNWTEDEFRKVIMGVGPGVENIELIKDPQNASRNRGFAFVLYYNNACADYSRKKMSSANFKLDGNTPTVTWADPKNAPDHSASSQVEMLDCYSLESSILDKKLGLKMEASKHSSTSSISTSLAKITADRWKLTEAAFKWCRDEGGSGEKKMVGKEKTLSIR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0140 354 Gene3D - 10 184 IPR012677 -
Lele38g0140 354 SMART rrm1_1 106 179 IPR000504 GO:0003723
Lele38g0140 354 SMART rrm1_1 186 263 IPR000504 GO:0003723
Lele38g0140 354 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 186 266 - -
Lele38g0140 354 SUPERFAMILY RNA-binding domain, RBD 102 209 IPR035979 GO:0003676
Lele38g0140 354 Gene3D - 185 266 IPR012677 -
Lele38g0140 354 MobiDBLite consensus disorder prediction 8 51 - -
Lele38g0140 354 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 185 - -
Lele38g0140 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 253 IPR000504 GO:0003723
Lele38g0140 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 177 IPR000504 GO:0003723
Lele38g0140 354 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 13 295 - -
Lele38g0140 354 SUPERFAMILY RNA-binding domain, RBD 186 272 IPR035979 GO:0003676
Lele38g0140 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 267 IPR000504 GO:0003723
Lele38g0140 354 CDD RRM_SF 107 179 - -
Lele38g0140 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Lele38g0140 354 MobiDBLite consensus disorder prediction 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0140 Lele-ChrLele38 1117319 1119866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0140 86 238 Eukaryotic Initiation Factors Gene Family AT2G36660 30.719 9.15e-10 58.2