Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0139 ATGGTTAAGGCTCTTTATGTGAAAAACATACCTGAGAATACTACTACTGAACAACTGAAGGAACTGTTCTGTCGACACGGAGAAGTAACAAAGGTGGTCATGCCTCCCGGTAAAGCTGGAGGCAAACGTGACTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTAAAGGCAGTAAAAGAGACAGAAAAATATGAAATAGACGGCCAAGCGTTGGAAGTTGTTCTAGCAAAGCCTCAAACTGAGAAGAAAACCGATGGGGGTTATACCTACAATCCTGGGCTTCATCCACATCCTGGGTATGGTGGTTTCTCAGGAAATCTATATGGTTCTTCTGTGCGGCCTGGATATGGCGGCGTTACCAGTGGTTATCAACAACCGGTGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTATTACCCGATGGTCGCATCGGCTATGTCCTTCAACAGCCTGGCGCGCAGATTTCGGCTCCCCGACCCCAGAGGAACAATGGTCGGAGTAGTCAGCCGGGGCGAGCGGGAAGCAGCGGCAATGATGAGGGCAATCGCAGTAGAAGGTATCGACCTTATTAA 597 0.4841 MVKALYVKNIPENTTTEQLKELFCRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVLAKPQTEKKTDGGYTYNPGLHPHPGYGGFSGNLYGSSVRPGYGGVTSGYQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGAQISAPRPQRNNGRSSQPGRAGSSGNDEGNRSRRYRPY 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0139 198 MobiDBLite consensus disorder prediction 157 198 - -
Lele38g0139 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 80 IPR000504 GO:0003723
Lele38g0139 198 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 168 - -
Lele38g0139 198 CDD RRM3_hnRNPR_like 2 80 - -
Lele38g0139 198 Gene3D - 2 127 IPR012677 -
Lele38g0139 198 SMART rrm1_1 4 76 IPR000504 GO:0003723
Lele38g0139 198 MobiDBLite consensus disorder prediction 162 186 - -
Lele38g0139 198 SUPERFAMILY RNA-binding domain, RBD 4 105 IPR035979 GO:0003676
Lele38g0139 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 73 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0139 Lele-ChrLele38 1115416 1117224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0139 5 168 Eukaryotic Initiation Factors Gene Family AT2G23350 26.816 4.15e-10 56.6