Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0106 ATGCCCTTCACGTGCTGCTCCGCGGACCCAGATATGAAGCTTGAGTTGGGTTTAGGAGGTGTGTTGTGGAATGATGAAGAAAAAGCCATGGTCTCATCGGTTCTGGGAAATCGAGCTTTTGAATACTTGATTTCAAACCCTGTGGCGAACGACAATTTGTTAATGACAGTCGGAAGCCAAGAAAGTTTGCAGAACAAGCTTTCGGATCTCGTGGACCGTCCAAACGTATCGAATTTCAGCTGGAACTATGCGATTTTCTGGCAAATATCACAGTCGAAGAAATCTGGGGATTGGGTTTTGGGTTGGGGAGATGGATGTTGCAGAGAACCCAAGGGAGGAAAAGAAGAAGGTGGAGTTAGAGGGCTTCTTACTCTTTGCCTGGAAAAAGATGAGATGCAGCAGAGGATGAGGAAAGGGGTTCTTCAGAAGCTTCACACAACATTTGGGGGTTCTGATGAAGACAATTATGCCTTTGGGTTAGATAGGGTTACTGATACAGAGATGTTCTTTCTGGCTTCCATGTACTTCTCCTTCCCTCGCGGCCATGGCGGGCCTGGTAAATGCCTTGCTTCAGGGAAGCATGTGTGGTACTTTGATGCACTGAGCTCTGATTACTGTGTGAGATCATTTTTGGCAAAATCAGCTGGAATTCAGACCATAGTTTTGGTCCCTACTGACATTGGAGTGGTGGAATTGGGTTCTGTGAGGATGGTAGGAGAGAGTTCAGAATTATTGCAGGTGATAAAATCAGAATTTTCTACGCAAATGTCAACTCCTAGGGTTTCCCCACTTTCACCATTGCCCGTTGCAGTGGATGAGAAGAGAGATGAAAATGGTATCTTTTCTGGTTTGCCTGTTGGGGATAAGGTGGAGGGAGTTCCAAAGATTTTTGGGCAGGACTTGAACTCGTTAAACTCTGGTCGTCCCCATTTTAGGGAGAAGCTTGCTGTGAGGAAAATGGAGGAGAGGCCTTCTTGGGCAGGTCATAGCCAGCCCAATGGCAGCAGTATTAGCTTTCCAAGTACGCGAAATTGTATTCATGGATCGAGTTGGGCGGCTAATCAAGGTGGGAAACAGGCGAGCTCAACGGGGATTTATCCTTCAAGGTCCTCAGGTTGCAATGCACCAGAGGGAGTTAACCAATTAAGGCAAGACTTTCGGCTTAGCAACTACCAACCACAAAGGCAGGTGCGAATGCAAATTGATTTCTCTGGAGCTACTTCACGGCCTTCTTTGAGACCAATCAATGCTGAATCAGAGCTATCTGATGTTGAAGCTTCATGCAAAGAAGAGCAGCTGGGTGCAATAGATGAGAGGAGGCCGAGGAAACGGGGTAGAAAGCCTGCCAATGGAAGGGAAGGACCCTTGAATCACGTGGAAGCGGAGAGGCAGAGGCGTGAGAAGCTGAATCAGCGGTTCTATTCTCTTAGATCTGTTGTACCCAATATATCCAAGATGGACAAGGCTTCTTTGCTGGGAGATGCCATTGCTTATATCCATGAGCTTCAAGCGAAACTCAAGATCATGGAATCTGAGAGAGATCGATCTGGAAGCACTTCAAGGGATGTTCCAACAATAGTGGCTGATCCAAAAGTAGAAAATCACAATCAAGCTACCGATGTTGATATTCAAGTTACCCAGGATGAGGTAATAGTAAGGGTGAGCAGCCCTCTCAATGCTCATCCTATTTCAAGAGTTCTCCAAAAGTTCAAAGATGCACAAATTAGTGTTGTTGAGTCGAAATTTGCAACTGCAAATGACACCATCTTCCATTCATTTGTAATCAAGTCTCAAGGATCTGAGCAGCTGACGAAGGAGCAGTTGATTGCAGCATTTTCTTGA 1842 0.4593 MPFTCCSADPDMKLELGLGGVLWNDEEKAMVSSVLGNRAFEYLISNPVANDNLLMTVGSQESLQNKLSDLVDRPNVSNFSWNYAIFWQISQSKKSGDWVLGWGDGCCREPKGGKEEGGVRGLLTLCLEKDEMQQRMRKGVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCLASGKHVWYFDALSSDYCVRSFLAKSAGIQTIVLVPTDIGVVELGSVRMVGESSELLQVIKSEFSTQMSTPRVSPLSPLPVAVDEKRDENGIFSGLPVGDKVEGVPKIFGQDLNSLNSGRPHFREKLAVRKMEERPSWAGHSQPNGSSISFPSTRNCIHGSSWAANQGGKQASSTGIYPSRSSGCNAPEGVNQLRQDFRLSNYQPQRQVRMQIDFSGATSRPSLRPINAESELSDVEASCKEEQLGAIDERRPRKRGRKPANGREGPLNHVEAERQRREKLNQRFYSLRSVVPNISKMDKASLLGDAIAYIHELQAKLKIMESERDRSGSTSRDVPTIVADPKVENHNQATDVDIQVTQDEVIVRVSSPLNAHPISRVLQKFKDAQISVVESKFATANDTIFHSFVIKSQGSEQLTKEQLIAAFS 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0106 613 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 453 502 IPR011598 GO:0046983
Lele38g0106 613 MobiDBLite consensus disorder prediction 403 463 - -
Lele38g0106 613 MobiDBLite consensus disorder prediction 322 341 - -
Lele38g0106 613 CDD bHLH_AtAIB_like 450 515 - -
Lele38g0106 613 Pfam Helix-loop-helix DNA-binding domain 457 503 IPR011598 GO:0046983
Lele38g0106 613 SMART finulus 459 508 IPR011598 GO:0046983
Lele38g0106 613 PANTHER MYC 52 611 IPR045084 GO:0003700|GO:0006355
Lele38g0106 613 MobiDBLite consensus disorder prediction 350 377 - -
Lele38g0106 613 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 63 252 IPR025610 -
Lele38g0106 613 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 516 IPR036638 GO:0046983
Lele38g0106 613 MobiDBLite consensus disorder prediction 423 463 - -
Lele38g0106 613 Gene3D - 448 517 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0106 Lele-ChrLele38 802769 807489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0106 16 613 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.525 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele38g0106 bHLH-MYC_N 7.8e-52 CL0161