LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele38g0091	ATGCCCACAATCAATTGGTCCTTGATTATTTACAAAATGCCCCAATTCCGTTTTTGGTGGAAAAAAAAATTGCTTTCATGCATGGCTGATTCTGGTGACCTTCCGAAATCTGCTGAAAATCAACAATCCGAGCAAGTGTGTAATTTCTTCAAGAAACCGGTTAATAGGAAGAATTTAAGAAAGCGTATTGTTGATGAAGAAGATAACGAGGAGGATTCAAAAAATGAAAGCTCCTTGTTACACATTCAGAAAAGACAGGTGAAGCCTGACAATAAGTTGTACTTTTCCACTGGTCCCTCAAAAAGCACAGCATCTAAAGTACCAGAGGAGCCTGAAAAGAAACTGTTTCATTTCGAGTCTTCAAAAGAGATTCAGGTTCAACATGATAATAAAGCAACGGCCACTCTTGAGACTGAAACCGATTTTTCAAGAGATGCTCGAGCTATTCGTGAAAGAGCCCTTAAGCAAGCACAGGAGAGTTTGAAGGGTAAAGGCACTAGTTCTGGAGAAGAAAAGTTGTACAAGGGCATCAATAGTTACAAAGATTACAAGGCTGGCTTTCGTCGAGAGCAAACAATTGCTAGTGAAAAAGCTGGCGGGGCCCATGGTCCTCTCAGGGCATCGGCTCATATAAGAGTTTCGGCAAGATTTGATTATCAGCCAGACATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCGTGCAAGTTTATGCATGATCGAGGAGATTACAAGTCTGGGTGGCAAATGGAGAAGGAATGGGAGGAAGCTGAGAAAGCTAGGAGAATGAGATTGACTGCAGGAGAGGATTCAGATGACGAGGGTGCTAATGTGAGTGATGAAGATGATGATGATTCATTACCATTTGCATGTTTCATTTGTAGGGAGCCCTTTGTGGATCCTGTTGTAACAAACTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCACCATTCAAAGAATAAGAAATGTTTTGTGTGCAACAAGCCTACTCTTGGCATTTTTAATGCAGCTCACGAGATACGCAAGAAGATGGCTGCAGAGGTTCTTACTGTAGACATGGTTGCAGATAGGGGATTTCAACTATGTTGCCTAACCTTTTGGATGGCTTGGATGCAGTTCATTGTTTTCTGGCTTATTGGATGTTGGAATACCTTAACAAGCTATGTGATTGGAAATGTACTAGAAAATGATGAAAAAGCTCTTGAATGGTTTCTTAAGAATAAGGCATCATTGACAGCTTCTAGGCTTTTTGCAGGATCCCATATTCAAATGGTCCATTGTGCTACATTTGGTATCACGAATGGGAATAAACATGGGAGTGAAGCTTTTCTAAAACTTATTTTTCCTAACAATGGTTAG	1377	0.4081	MPTINWSLIIYKMPQFRFWWKKKLLSCMADSGDLPKSAENQQSEQVCNFFKKPVNRKNLRKRIVDEEDNEEDSKNESSLLHIQKRQVKPDNKLYFSTGPSKSTASKVPEEPEKKLFHFESSKEIQVQHDNKATATLETETDFSRDARAIRERALKQAQESLKGKGTSSGEEKLYKGINSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARRMRLTAGEDSDDEGANVSDEDDDDSLPFACFICREPFVDPVVTNCKHYFCEHCALKHHSKNKKCFVCNKPTLGIFNAAHEIRKKMAAEVLTVDMVADRGFQLCCLTFWMAWMQFIVFWLIGCWNTLTSYVIGNVLENDEKALEWFLKNKASLTASRLFAGSHIQMVHCATFGITNGNKHGSEAFLKLIFPNNG	458

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele38g0091	458	MobiDBLite	consensus disorder prediction	265	286	-	-
	Lele38g0091	458	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	293	352	IPR013083	-
	Lele38g0091	458	SMART	ring_2	295	332	IPR001841	-
	Lele38g0091	458	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	219	244	IPR000571	GO:0046872
	Lele38g0091	458	MobiDBLite	consensus disorder prediction	92	111	-	-
	Lele38g0091	458	PANTHER	ZINC FINGER PROTEIN 183	42	353	IPR039971	-
	Lele38g0091	458	ProSiteProfiles	Zinc finger C3H1-type profile.	218	246	IPR000571	GO:0046872
	Lele38g0091	458	SUPERFAMILY	CCCH zinc finger	217	249	IPR036855	GO:0046872
	Lele38g0091	458	SUPERFAMILY	RING/U-box	294	337	-	-
	Lele38g0091	458	Pfam	Zinc finger, C3HC4 type (RING finger)	294	336	-	-
	Lele38g0091	458	ProSitePatterns	Zinc finger RING-type signature.	310	319	IPR017907	-
	Lele38g0091	458	Gene3D	-	216	250	-	-
	Lele38g0091	458	Coils	Coil	56	76	-	-
	Lele38g0091	458	CDD	RING-HC_RNF113A_B	293	333	-	-
	Lele38g0091	458	FunFam	RING finger protein 113A	293	352	-	-
	Lele38g0091	458	ProSiteProfiles	Zinc finger RING-type profile.	295	333	IPR001841	-
	Lele38g0091	458	MobiDBLite	consensus disorder prediction	63	82	-	-
	Lele38g0091	458	FunFam	Zinc finger CCCH domain-containing protein 1	216	250	-	-
	Lele38g0091	458	SMART	c3hfinal6	218	245	IPR000571	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele38g0091	Lele-ChrLele38	697931	701779	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele38g0091	28	353	C2H2 Transcription Factor Family	AT1G01350	67.857	9.62e-167	471

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Lele38g0091		zf-C3HC4_3	1.5e-08	CL0229