Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0060 ATGGTGTCGGTAAATCCGAACCCAGCTCAAGGCTTCTACTTCTTCGATCCCATCAAGATGGGCCTTCCCGGTGTCAATCCTACGCCGCCACCTCCGGCTACGGCTACGGCTTCTTCCTCCACTTCCACCACCGCCGGCGTCAGCGCCGCTTCTTACGGGGAGGATCTGAGTAAGAAGATCCGAAAACCATACACGATTACCAAGTCCAGGGAGAGCTGGACGGAGCAGGAGCACGACAAGTTTCTCGAAGCTCTCCAATTATTTGACCGTGACTGGAAGAAGATTGAAGCATTTGTTGGCTCAAAAACTGTTATCCAGATACGAAGTCATGCACAGAAGTATTTCCTGAAAGTTCAGAAGAATGGAACAAGTGAACATGTGCCTCCTCCTCGGCCAAAAAGAAAGGCTGCTCATCCATACCCACAAAAGGCACCTAAAAATGCTCCAGTGGTATCCCAAGTTACGATGCCATTGCAATCTTCATCTTCTTTCATTGAGCCCTCATACATTTATAGGCCAGACTCATCATCTGCACTTAGAACTCCAGTTACCAATGTGCCTCTGTCAAATTGGACTTGTAATGTTATCCCGCTGACCAGTGGGCCACAAGTGACTAGAGATGAGATGGGATTGCCTGGGAAAGCTGCTTCTCTAAATTGTTGCTATAGCAGTAGTAATGAGAGCACTCCAAGGGCCTGGCCAGGTAGCAAAGTTATTGATCAAGGGAACTCAGGCAAGCCAATGAAAGTAATGCCAGATTTTGCACAAGTCTACAGCTTTATTGGTAGTGTGTTTGATCCAAATGCATCAAATCACTTGGAGAGACTGAAACAGATGGACCCAATAAATGTGGAAGCAGTCTTATTATTGATGAGAAACCTCACCATCAATTTAATGAGTCCCAAATTTGAAGATCATAGACGGTTGCTTTCATCCTACGAGCCCAGCTCTTAG 954 0.4654 MVSVNPNPAQGFYFFDPIKMGLPGVNPTPPPPATATASSSTSTTAGVSAASYGEDLSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKNAPVVSQVTMPLQSSSSFIEPSYIYRPDSSSALRTPVTNVPLSNWTCNVIPLTSGPQVTRDEMGLPGKAASLNCCYSSSNESTPRAWPGSKVIDQGNSGKPMKVMPDFAQVYSFIGSVFDPNASNHLERLKQMDPINVEAVLLLMRNLTINLMSPKFEDHRRLLSSYEPSS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0060 317 MobiDBLite consensus disorder prediction 24 50 - -
Lele38g0060 317 Gene3D - 73 120 - -
Lele38g0060 317 MobiDBLite consensus disorder prediction 120 148 - -
Lele38g0060 317 CDD SANT 72 115 IPR001005 -
Lele38g0060 317 MobiDBLite consensus disorder prediction 35 50 - -
Lele38g0060 317 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Lele38g0060 317 SMART sant 69 117 IPR001005 -
Lele38g0060 317 PANTHER SWI/SNF COMPLEX-RELATED 35 299 - -
Lele38g0060 317 SUPERFAMILY Homeodomain-like 64 120 IPR009057 -
Lele38g0060 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Lele38g0060 317 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 68 117 IPR006447 GO:0003677
Lele38g0060 317 FunFam protein REVEILLE 6 isoform X1 72 120 - -
Lele38g0060 317 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lele38g0060 317 ProSiteProfiles SANT domain profile. 68 121 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0060 Lele-ChrLele38 404723 408399 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele38g0060 Myb_DNA-binding 2.6e-11 CL0123