Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0055 ATGAACCTTACAACATATGCTGATCGCATTCATGCAATAATTCCAGGTACTTCATTGATTCAAGCCTATTCCAAAGCATTTTCCAAGAACCATTGTAGAACAACTTTCACTTCTGAAAACACCAAGCTCTTCAATACCAAACCCAATGCTTCTTCTTTCTCTCCTAAATTTTCCATTTTCGTTCGTTTCCATAATGCTCTTCCTTCTGCTTCAACGACTTCTGTTGGTACAAGTGATTGGCCTGAGAAAATCAAAGATTATCGGAAGAATGCAGTAGAGAAAGTAATACATTGTGCAGAAAAGGTTGAAGAAGCCTCCGATGGGTTTACTCTCTATATTTACAACCTGGTTATTCCAGTAGGTGGTACATTGACAGCCGCTCTGATAGCATGGATCGTGATGCCTCGGATTCTGAGGAAACTTCACAAGTATTCAATGCAAAGTCCTGCTGCAATACTTCTGGAAGGAAGTATATCTGGAGAAGAAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTTTAGAGGATCCAGTGAGATATTTGGTCACCTTCATGGCATTCTCACAGATTTGTGTGATGGTAGCTCCAACAACTTTAGCCTCACACCTCGCACAGGCTTGGAGGGGTGCTGTGATCCTTTCATTTGTGTGGTTTTTGCATCAGTGGAAAACAAATACGTTTGGGCACATTTCGTCTGGGCAAAGTTTTCTAGGGCTTGGTCAAGATAAATTGCTTGCTCTACACAAAGTCTCATCTGTTGGTCTATTTGTGATTGGTATAATGGCTTTGGCCGAGGCTTGCGGCGTCGCTGTACAATCTATTGTAACTGTTGGTGGCATAGGAGGAGTTGCCACTGCTTTTGCTACCAAAGACATCCTTGGCAATGTATTTAGTGGGCTGTCTATGCAGTTTTCAGAGCCCTTCACAGTTGGAGATATAATCGAAGCTGGAACGGTAGAGGGAGAAGTGGTGGAAATGGGACTTACAACTACATCATTGCTGAATGCTGACAAGTTCCCTGTTGTAGTGCCAAACTCACTTTTTTCCAGCCAGGTGATTGTGAACAAGTCTCGCGCTGAATATTGCGCCATCACATCTAAAATTCCTCTGGGGATTGAAAATTTGAGTAGAATTCCCAGAATATCAGAAGATATAAAGAGAATGCTAAAAACAAAGACAAAGGTTTTCTTAGGAAAAGAGGCCCCTTATTGTTATCTGTCACGCATTGAAAGATCATTTGCACAGTTGACTATTGGATACAACATCAAGTACATGGGCAAAGATGAGATGTATAGTGCGGAACAAGATATACTGATGGAAGTAGTTGAGATTATTAAGAAGCATGGTGGTCAACTTGGCCACCCTTGGCGTCACATGTCTTATGATTCCGAGTAA 1392 0.4174 MNLTTYADRIHAIIPGTSLIQAYSKAFSKNHCRTTFTSENTKLFNTKPNASSFSPKFSIFVRFHNALPSASTTSVGTSDWPEKIKDYRKNAVEKVIHCAEKVEEASDGFTLYIYNLVIPVGGTLTAALIAWIVMPRILRKLHKYSMQSPAAILLEGSISGEEVPYEKSFWGALEDPVRYLVTFMAFSQICVMVAPTTLASHLAQAWRGAVILSFVWFLHQWKTNTFGHISSGQSFLGLGQDKLLALHKVSSVGLFVIGIMALAEACGVAVQSIVTVGGIGGVATAFATKDILGNVFSGLSMQFSEPFTVGDIIEAGTVEGEVVEMGLTTTSLLNADKFPVVVPNSLFSSQVIVNKSRAEYCAITSKIPLGIENLSRIPRISEDIKRMLKTKTKVFLGKEAPYCYLSRIERSFAQLTIGYNIKYMGKDEMYSAEQDILMEVVEIIKKHGGQLGHPWRHMSYDSE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0055 463 Gene3D - 306 354 IPR023408 -
Lele38g0055 463 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 204 289 IPR011014 GO:0016020
Lele38g0055 463 Pfam Mechanosensitive ion channel 248 448 IPR006685 GO:0016020|GO:0055085
Lele38g0055 463 SUPERFAMILY Sm-like ribonucleoproteins 290 355 IPR010920 -
Lele38g0055 463 Gene3D - 202 304 - -
Lele38g0055 463 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 80 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0055 Lele-ChrLele38 372917 375130 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0055 80 457 Mechanosensitive Ion Channel Family AT4G00290 61.954 1.99e-174 497