Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0051 ATGGGAGGTTGCTGCTGTTCTGCCAGAAAACCTCATCTACACGGCACACCAGTGTATTATTATTGCCCACCAGCTTTGGAAGAGCGCGAGCCATTAACCTCAAATGATGGTACGGCTGCTTCACTCGGTGCTGGATTCCTAGCAGGTTTTAACTTGGAAACATCCACACCAGATACATACCAGCCCCCTCCTGCACCTTTGCCTTATGATGTGGACTTTGGTCCAATATCAACAGATTCTGAATCTGGAAGAAAAACAGTTGGTGGTAGCAGTTTTGAAACATTAATTACATGTGAAGATCTTGAAGAATCAGATTGCAAAGCTCAAGCAAATTCTGAACTTTTGTCTCCAAAGAAGATAGAACTATCAAAATCAAATGAATGCCATGTACTAATGACAGAAGAAGAAGAAGAAGTCTGTCCAATTTGTCTTGAAGAATATGAGGTTGAGAATCCTAAAACACTGACAAAGTGTGAACACCATTTTCACCTATCTTGCATTCTTCAGTGGATGGAAAGAAGTGAAACGTGTCCTATATGCGATCAGGAGATGATATTTGAGTAG 564 0.4113 MGGCCCSARKPHLHGTPVYYYCPPALEEREPLTSNDGTAASLGAGFLAGFNLETSTPDTYQPPPAPLPYDVDFGPISTDSESGRKTVGGSSFETLITCEDLEESDCKAQANSELLSPKKIELSKSNECHVLMTEEEEEVCPICLEEYEVENPKTLTKCEHHFHLSCILQWMERSETCPICDQEMIFE 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0051 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 185 IPR013083 -
Lele38g0051 187 SMART ring_2 140 180 IPR001841 -
Lele38g0051 187 SUPERFAMILY RING/U-box 134 185 - -
Lele38g0051 187 Pfam Ring finger domain 140 180 IPR001841 -
Lele38g0051 187 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Lele38g0051 187 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 43 186 - -
Lele38g0051 187 FunFam Putative E3 ubiquitin-protein ligase RHB1A 115 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0051 Lele-ChrLele38 345494 346612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0051 1 187 C3H Transcription Factor Family AT4G00335 56.915 6.13e-72 214