Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0048 ATGGCAAGGTGGTCGATACCTGATGAGGCCCAATATTCATTTGATCAATTTATTGAGTTTTTTAAAGAAATATCTACCCATAATTGTTCTCGACCTATTCCACCAATGCTTGGTAATGGGCAACCAGTGGATTTAAAAACCTTATTCTTAATTGTGATAGGGAAAGGAGGGTATGATGCAGTCTCCAAAAACAATTTATGGAATTTGGAGGCCGAAAGATCTGGGTTAGGTGTGAATATTGGTTCATCAGCAAAGTTGATCTATTATAAGTATTTAGGAACTTTAGAGACCTGGCTCATAAAATTTTCTGAGGGTAGGGTACTTGGTTATAGTTTGAGTGATGGTGGAATCAACTTTGGTAGGCAACTGATGGAACTTCAAGCTAAAATAAAAAGGCTATTGTCAGATTACATTGTTCTGGATGGAGTAAAGAGTAAAGTTCAAGATAATGGATTTCTTGGTTTGGATATGCCAAGAAACTTGTGCAATCTTGATGACACAATGACATTGAAAGAGTATGAAGGAAGGAAGATCATTGCAAAGAAGCTAGTCAATGCATTAGATGTAGGCGATTCATCTAATAATAATGAAGTGAAAAATGTAGCTAGTTTGTCTAATGGAGGAAAGAGATTTGCTCATGATGATGTCTTGATATTAGATCAACCAAATGTTAATAAGGAGAACTTTGGGCGTAAGAGGAAAAGAAAGTCTACGCAAGAAATGCTATGTTGGGTAACTAGCATCGCAAAGAATCCATGTGATCCTATAGTTTGTTCAATACTTGAAAGATCAAAGTGGAGTTCTCAAACTTTCGAAGAGATTAAGAAGCAAGTTTTGTTGTTTCGAGAGGCTGTCTTTACTGTTGAGTCAAGCAAACAACATGACGATTCGCAGGGTATGAAGGTGCATCCTCGCATGTCTGATGATGATCATCCAGGAACAACCACTTGCAATCTTAAGGAAAGGTCGAATTCTGGTAACAGGAGGTTTCCAAATAAAAAGTCCGTATCTGTTGTCCCAGTCTCATCAAAAGTAGTTCCCGTAGGAACTGAATTAGGTGATTCAAAGAATGCTCCTCAAGCTCCACAACTTGAAGATCTTGCTGAGAAAACTGCACTTTCTTCAGCCCTTGATAAATTTAGCAAAACAACCGTCTCTATAGGGACAGCTCATCAGGCAAATGTACAGGAATGGACTGGTATGAATTCTGAAAGTGATCCTAAATGGTTGGGGACTCAAATATGGCCATTAAAACGTGCAAATCATAGACTTCTCATCGAAAGGGATTCCATTGGAAAGGGAAGATATGACTTTTGCAACTGTCAAGTGCCAGGATCAGTGGAGTGTGTCAAATTTCACATTGCTGAAAATAGAGAGAAAGTTAAATTGGAATTGGGTGTGGCTTTTTACCATTGGAATTTCAACATGGTTGGGGAGGAGGTTAGCCATTCTTGGACTCACGAAGAGGAGAAAAAGTTCAAGGATGTGGTGCAAGCAAACCTCAAATCACCCAAGAAATGTCTTTGGGATCGTGTTTTCAGATCCTTTTCTAAGAAAAGCCGAGAAGATTTAGTCAGCTACTACTTCAATGTTTTTGTTCTGCGACGTCGAAGATTCCAGAATCGACACTCTCCAGATAACATTGATAGTGACGATGATGTATTGGAGTCGGAACCTCTGATCAAACCCAAAGCAATTGACTCAGTTGCTAGTAAAAATAGATGTACTTATCAACCCAAATTCAATTCCTCTAGAAAATACTTTAATTTGGAGATAAATCGAAAATATAATATCGAGAGTATGAGCAAATTAATGACTGTGATGAGTTCTGACATAATCTCTGGTGTCTTGACCAAAGGGAAAGTTGCTAAAGAGAAAGAAGAAAAGAAAAATCCATCGGGAAAGATGTCTTCCCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTCGAGATGATTAACGATGGAATGCAAGAATTTTATGTGCATTTCCACGGACCCAGTGATAGTCCTTATCATGGAGGGGTGTGGAAAGTAAGAGTTGAGCTGCCAGATGCTTATCCATATAAATCTCCTTCCATAGGCTTTGTCAATAAGATTTATCACCCAAATGTTGATGAGATGTCAGGTTCTGTTTGTCTAGATGTTATTAATCAGAGCTGGAGCCCCATGTTTGATCTTGTTAATGTATTTGAGGTGTTTCTACCACAACTTCTTCTATATCCCAATCCCTCAGACCCTTTGAATGGAGAAGCCGCCGCTTTAATGATGCGTGACCGAGCTACTTATGAACAAAGGGTTAAAGAGTACTGTGAGAAGCATGCCAAGCCTGAAGACATCGGAGCTGCTACAGAAAAAATATCAAGTGATGAGGAGCTAAGTGAAGATGAATATGATTCAGGTGATGATGACCAGGTAGCCGGTGAAGCAGATCCCTGA 2460 0.3927 MARWSIPDEAQYSFDQFIEFFKEISTHNCSRPIPPMLGNGQPVDLKTLFLIVIGKGGYDAVSKNNLWNLEAERSGLGVNIGSSAKLIYYKYLGTLETWLIKFSEGRVLGYSLSDGGINFGRQLMELQAKIKRLLSDYIVLDGVKSKVQDNGFLGLDMPRNLCNLDDTMTLKEYEGRKIIAKKLVNALDVGDSSNNNEVKNVASLSNGGKRFAHDDVLILDQPNVNKENFGRKRKRKSTQEMLCWVTSIAKNPCDPIVCSILERSKWSSQTFEEIKKQVLLFREAVFTVESSKQHDDSQGMKVHPRMSDDDHPGTTTCNLKERSNSGNRRFPNKKSVSVVPVSSKVVPVGTELGDSKNAPQAPQLEDLAEKTALSSALDKFSKTTVSIGTAHQANVQEWTGMNSESDPKWLGTQIWPLKRANHRLLIERDSIGKGRYDFCNCQVPGSVECVKFHIAENREKVKLELGVAFYHWNFNMVGEEVSHSWTHEEEKKFKDVVQANLKSPKKCLWDRVFRSFSKKSREDLVSYYFNVFVLRRRRFQNRHSPDNIDSDDDVLESEPLIKPKAIDSVASKNRCTYQPKFNSSRKYFNLEINRKYNIESMSKLMTVMSSDIISGVLTKGKVAKEKEEKKNPSGKMSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPSDSPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRATYEQRVKEYCEKHAKPEDIGAATEKISSDEELSEDEYDSGDDDQVAGEADP 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0048 819 Gene3D Ubiquitin Conjugating Enzyme 631 794 IPR016135 -
Lele38g0048 819 FunFam Ubiquitin-conjugating enzyme 5, E2 636 794 - -
Lele38g0048 819 MobiDBLite consensus disorder prediction 797 819 - -
Lele38g0048 819 Gene3D - 7 106 IPR036431 GO:0003677
Lele38g0048 819 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 708 724 IPR023313 -
Lele38g0048 819 SMART ubc_7 639 783 - -
Lele38g0048 819 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 635 783 IPR000608 -
Lele38g0048 819 SUPERFAMILY ARID-like 17 104 IPR036431 GO:0003677
Lele38g0048 819 MobiDBLite consensus disorder prediction 292 336 - -
Lele38g0048 819 SMART ARID_2 5 96 - -
Lele38g0048 819 Pfam ARID/BRIGHT DNA binding domain 16 95 IPR001606 GO:0003677
Lele38g0048 819 ProSiteProfiles ARID domain profile. 7 100 IPR001606 GO:0003677
Lele38g0048 819 MobiDBLite consensus disorder prediction 292 316 - -
Lele38g0048 819 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 19 584 - -
Lele38g0048 819 CDD ARID 15 96 - -
Lele38g0048 819 SMART bright_3 7 101 IPR001606 GO:0003677
Lele38g0048 819 MobiDBLite consensus disorder prediction 781 819 - -
Lele38g0048 819 CDD SANT 484 532 IPR001005 -
Lele38g0048 819 MobiDBLite consensus disorder prediction 317 336 - -
Lele38g0048 819 MobiDBLite consensus disorder prediction 622 642 - -
Lele38g0048 819 MobiDBLite consensus disorder prediction 781 796 - -
Lele38g0048 819 Pfam Ubiquitin-conjugating enzyme 645 777 IPR000608 -
Lele38g0048 819 CDD UBCc 642 778 IPR000608 -
Lele38g0048 819 SUPERFAMILY UBC-like 639 783 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0048 Lele-ChrLele38 328174 336859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0048 622 750 Miscellaneous Gene Families AT3G17000 24.818 5.61e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele38g0048 UQ_con 6.4e-38 CL0208