Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0047 ATGCAGTCATTGCAACAGCAATTACTTCGAAAACCTGAAGGGAATGAAACTTTTTTAGCATATCAAGCAGCCCTCCAGGGGGCATTTTGGGGTAACAATTTTTCATCTCCCAGTGCCATGCAGTTGCCTCAACAATCTCGGAAATTCAATGAATTAACCCAACATGGTCCCAAACAAGAGGCCCAACTCAAGGCTCAAAACATTGAGCAGCAAATGCTAAATCCTGTTCATCAAGCATACCTTCAATATGCACTCCAGGCTGCCGAACAAAAGTCTGCTTTGGCAATCCAGTCTCAGCAGCAAAATAAAATGGGAACGTTAGGGTCTTCCTCTGTGAAGGATCAAGAAATGCGATTGGGAAATATGAAAATGCAGGACCTTATGTCCATGCAGGCGGTAAATGAAGCTCAAGGATCTACCTCCAGGAATGTACCTGAACAATTTTCTCGTGGTGAAAAGAAGATAGAGCAGGGACAGAAGTTAGCCCCTGATCTAAAAAGTGAGGGAAATCCTTCAACTCAGGGACCAGCCACGGCACCATTAATGCCTGGAAATATGATAAGACCTGTACAAGCACCCAATGCTTGGCAGGGCATCCAGAATGTCATGAGCAACCAGATTGCAGTGTCTGCTCAATTACAGGCTATGCATGCATGGGCACGTGAGCGTAATATTGATCTATCACATCCTGCAAATGCTAACTTAATGGCGCAACTCTTTCCTATGATGCAGTCAAGGATGGTTTCTCAACAAAAAGCAAATGACAGCGGCATTTGTGCTCAGTCATCACTTGCACCTGTTTCAAAGCAGCAGGTTTCATCTCCAGCAGGTGCAAGTGATAGCTCAGCACATGCTAATTCATCAAGCGATGCTTCTGGGCTGTCCGGTCCTGCAAAAGCTAGGCAGATACCTGCCAAACATTTTGGTCCACCAACCAATGCTGTTACAGCTAGCCACTCCAGTGACACTGTAATGCAGCAATTCAATAATCACAGCAGAGAGTCTCAAGTATCCATGAGGCTACCTGTTTTAGTTAGAAATGGAATGCCTTCTGGGCAGCCCCAACAGTCCTCTACCAGCATGAATTTGGGTTCAGATCATCATTTGAATGCAAAAAGTACTTTATCTGGTCCAGAACCTCCTCAAATGCAGTATTTAAGGAAGTTAAACCAATCGTCTCCTCGGACATCAGGTGCTACAGATGAAGGGGGCTCGGGAAATTATGTGAAATCCCAAGGGGCAACATCTCAGATGCCTCAACAACGACATGGATTTACCAAACAACAGCTGCATGTTCTTAAAGCACAGATACTGGCATTTAGGCGGCTCAAGAAAGGAGATGGTACCCTTCCCCAAGAACTTCTTCGGTCTATTGTCCCACCACCTCTTGAGTTGCAATTGCAGCAGCCAATCCATCCTTCAGGAGGACAAAATCACGATAAGTCTGCTGGAAACATCATTCCAGAACACTCAAGGCACATAGAATCTGAAGCAAAGGACTTGCAACATGTCCCTTCAGTTAATGGACAGGGTTCTTCAAAGCAGGAAACTTTTGCGAGAGATGAGAAATCCACTGTCTCAGCAGTTCATATGCAAGCTAAACCTGTTGCAGCAAAGGATCCTCCTCCAATGCTATCTTCTCAAAAGGAAGAGCAACAATCATTTGGTTGCTCTGTTAAGTCAGATCAGGAAAGTGAACGTGAAACTAACAGAAATCCTGTTAGGAATGAGTTGCCGTTAGACAGGGGGAAGGCTAGTGCACCCCAGCCTTCCGCATCTGAGTTGATGCAAAATAACAACCCTACACAAACAAGCACAGTTGGGCAGCCAAAAGCTGTAGGATCTACAAGAAAATATCATGGACCCCTATTTGATTTCCCCTTCTTTACCAGGAAACATGACTCCTTTGGGTCATCAATGATGGTAAGCAACAACAATAATTTGTTACTGGCATATGATGTCAAGCATCTTCTTGCTGAGGAAGGCATGGAAGTACTTAACAAGAAAAGGACAGAGAATTTAAAGAAGATTGAAGGTCTACTAGCAAATAATTTAGAGAAGAAACTAATTAGGCCAGATCTCGTGTTGAGGTTACAAATTGAAGAGAAAAAGCTTCGTCTTAGAGGGCTTCAGGCACGTTTAAGGGATGACATTGATCAACAGCAACAAGAGATAATGTCAATGCCAGACAGGCAATACCGTAAGTTTGTTAGGTTGTGTGAGCGTCAGCGGATAGAACTGGCTAGGCAAGTGCAAGCATCACAGAGAGCTATAAGGGAGAAGCAACTCAAATCCATATTTCAGTGGCGTAAAAAGCTTCTTGAGGCACACTGGGCCATTCGTGATGCTCGGACTGCTCGGAACAGGGGGGTGGCCAAATATCATGAGAGAATGTTAAGGGAGTTTTCAAAACGTAAAGATGATGACAGAAACAAAAGGATGGAAGCCTTGAAAAATAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATGCCGGGGGATGCTGCTGAAAGATACTCTGTTGTTTCGACTTTCTTAACACAGACAGAAGAGTATCTTCATAAGCTGGGAAGTAAGATAACAGCTGCCAAGAATCAACAGGAAGTAGAGGAGGCAGGAAAAGCTGCTGCAGCTGCTGCACGGTTGCAGGGTCTTTCTGAAGAGGAGGTTAGAGCAGCAGCAGCGTGTGCTGGAGAAGAAATGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAAAGTTGGTTCATCTGTCAGCAAATATTACAGCCTTGCTCATGCTGTGAATGAGAAGGTCATAAGGCAACCATCAATGTTGCGGGCAGGAACATTGAGAGATTATCAGCTTGTTGGCTTGCAATGGATGCTTTCTTTGTATAACAACAAGTTAAATGGAATTTTGGCGGATGAGATGGGTCTTGGCAAAACTGTGCAGGTTATGGCATTGATTGCCTATTTGATGGAATTCAAAGGAAATTATGGCCCACATCTCATAATAGTCCCGAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTGTATAACTGGTTACCATCTGTGTCATGCATTTTTTATGTTGGAGGGAAGGATCAACGATCAAAATTATTTTCTCAAGAGGTTTGTGCATTGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGACCGGTCAAAGCTTTCAAAAATTGATTGGAAGTATATCGTAATTGATGAAGCACAGAGGATGAAAGATAGGGATTCAGTTCTAGCACGTGATCTTGATCGATATCGTTGTCAAAGACGCCTGCTTTTGACTGGAACCCCCTTACAGAATGATTTGAAGGAGCTTTGGTCACTTTTAAACCTACTTCTTCCTGAAGTTTTTGACAATCGTAAAGCATTTCATGATTGGTTCTCGAAACCTTTTCAAAAGGAAGGCCTTAGTCAAAATGCAGAGGATGATTGGCTTGAGACAGAAAAGAAAGTTATAATTATCCATCGACTTCATCAGATTCTTGAGCCATTCATGCTCAGGCGTCGTGTTGAAGATGTAGAAGGCATGCTGCCACCAAAGGTCTCTATAGTTTTGCGATGTAGAATGTCAGCTATCCAGAGTGCTATTTATGACTGGGTCAAATCCACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAACTTAAGGTTCAAAAGAATCCAGTCTACCAGGCGAAGCAATATAAAACGTTAAATAATAGATGCATGGAGCTGCGTAAAACTTGCAATCATCCATTGCTTAACTACCCATTCTTCAATGACTTATCCAAAGATTTCCTTGTAAAATCTTGTGGGAAACTGTGGATCTTGGATCGAATCCTTATAAAACTTGAAAGGACCGGGCACCGAGTTCTGCTCTTTAGTACTATGACAAAACTATTGGACATCTTGGAAGAATACCTACAATGGCGACGGCTTGTGTACAGAAGAATTGATGGGACAACGAGTTTAGAAGATCGTGAATCAGCTATAGTGGATTTCAATAGTGCTGATTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGGCGAGGCCTTAACCTTCAGTCTGCTGACACAGTAGTCATATATGATCCTGATCCAAATCCTAAAAATGAGGAGCAAGCGGTTGCTAGAGCTCATCGCATTGGGCAGAACAGAGAAGTCAAAGTTATCTACATGGAAGCTGTTGTAGACAAAATCTCCAGCTATCAAAAAGAGGATGAACTGAGAAGTGGAGGCACTGTTGATATGGAGGAAGAACTTGTAGGTAAGGATCTTTATATTGGATCCATTGAAAGCCTAATAAGGAACAATATTCAACAGTACAAGATTGATATGGCTGACGAGGTCATTAATGCTGGACGTTTTGACCAAAGAACAACACATGAAGAGAGACGCTTGACTTTGGAGACATTATTACATGATGAAGAGAGGTATCAGGAGACGGTCCATGATGTTCCCTCACTACAGGAGGTAAATCGCATGATTGCTAGGAGTAAGGAGGAAGTTGAATTGTTTGATCAAATGGATGAGGAATTGGATTGGATTGAAGAGATGACAGGATATGATCAGGTGCCTAAGTGGCTACGAGTAAGTACAAGAGAAGTAAATGCCACCATTGCTGCTTTATCAAGAAGACCATCAAAGAACACTCTATTGGGTGATGTTGGCGTGGAATCCAGTGAAATGGGCTCTGAAAGGAGAAGGGGACGACCCAAGGGAAAGAAAAATCTTAATTATAAAGAGTTAGATGATGAAAATGAAGAATTCTCTGAAGCAAGTTCTGATGAAAGAAATGAATATTCAACCCATGAAGATGAAGGGGAAATTGGAGAATTTGAAGATGATGGGCTGAGCGTGGAAGATGGAGCTCAGCCCAATGATAAGGATCAATTGGAAGATGGTCCAATTTGTGATTCTGGATATGTATTTCCTCAGTCTACTGAGAATGCTAGAAACAATCTTACGGCTGAGGGATCTGGATCCCCAGGAACATCTTCAGATAGTGAAAGGTTGACACAGACGATATCTCCTTCAGTTTCCTCCCAGAAATTTGGTTCCCTCTCTGCATTGGATGCCAGGCCAAGTTCCCTTTCGAAACGGATTGTATGTTTAGAGGAGGGAGAAATTGCTGTATCTGGTGATTCTCACATGGATAATCAACAATCTGGGAGTTGGATTCATGATCGTGATGAAGGTGAAGATGAACAAGTTTTGCAACCTAAGGTTAAGCGTAAACGTAGCCTTCGTGTTCGACCTCGTCTTGCCATGGAGAGGCCAGAGGAAAAGTATGGTGGTGACATGGGATCTCTTCACCAAGGAGAATCATCTATTTTGTCTGTTCGTACAGACCATAGATTTCAAGAGCAAGCAAGGACTGATCCTGAAGAAAAGTCATTTGGAGGATCCAATGCCAGCAGGCATGATCAGAATGAGTCATCCTTGAAAGTAAAGAGAAATTTACCTTCAAGGAGAGTAGCTACTACCTCCAAATTTCAAGCCTCACCTAAGTCTAGTCGATTGAATTGCATTTCTACTCCTGAGGATGGTGGACACTCAAGAGAAAGTTGGGAGGGGAAGCCTATCAACTCTAGTGGGTCTTTGGCCTTATCCTCTAAAATGCCTGAAATCATCCAAAGAAGGTGCAAGAGTGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGTCAGCAAATTATACCTTTGCTAAAAGATTTATGGAAGAGGATTGAAAGTTCAGGTTACACAGGTGGATCTGGGAATAGTTTTTTGGATTTGCGGAAGATTGACCAGCGAATTGATAGATTGGAGTATAGTGGAGTAATGGAGCTTGTGTTTGATGTGCAGTTCATGCTGAAGAGTGCAATGCATTTTTATGGGTTTTCACATGAGGTAAGATCTGAAGCAAAAAAGGTTCATGATCTCTTTTTTGATATCTTGAAAATTGCTTTTCCTGATACGGATTTCCGAGAAGCAAGAAATGCACTTCCTTTCTCGGGTCAAATTTCAGCCAGTGCTGTAACATCTCCCAGAAAAATGGCTGGCAACCATACCAAGAGGCACAGGACGATAAATGGGGTGGAAACTGATGCAGGCCCTTCACAGAAGCACCTGCAACGTGGATTTGCTTCAAGTGGGGAAAACACCAGGATCAAAGTTCATATTCCACAGAAGGAATCAAAATCTGGAAATGGAGGTGGCAACAGCCGAGAACATCAGCAGGATGATTCTCCACTGCTTACTCATCCAGGTGAACTAGTAGTATGTAAGAAGAGAAGAAATGACAGGGACAAATCATTGGCGAAGTCCAGGACTGGGTCAGTTGGCCCGGTCTCACCAGCCAGTGTGGTTCCTGCTGCCAGAAGTCCAGGGCTTGGTTCAGTCCCAAAGGATGCTAGACTGGCGATTGGCCAGCCATCTCAGCAATCGAATGGATCAGGTGGGTCAGTTGGCTGGGCGAATCCAGTAAAGCGATTAAGGTCAGATTCTGGGAAGAGAAGACCAAGTCATCTGTAG 6543 0.4313 MQSLQQQLLRKPEGNETFLAYQAALQGAFWGNNFSSPSAMQLPQQSRKFNELTQHGPKQEAQLKAQNIEQQMLNPVHQAYLQYALQAAEQKSALAIQSQQQNKMGTLGSSSVKDQEMRLGNMKMQDLMSMQAVNEAQGSTSRNVPEQFSRGEKKIEQGQKLAPDLKSEGNPSTQGPATAPLMPGNMIRPVQAPNAWQGIQNVMSNQIAVSAQLQAMHAWARERNIDLSHPANANLMAQLFPMMQSRMVSQQKANDSGICAQSSLAPVSKQQVSSPAGASDSSAHANSSSDASGLSGPAKARQIPAKHFGPPTNAVTASHSSDTVMQQFNNHSRESQVSMRLPVLVRNGMPSGQPQQSSTSMNLGSDHHLNAKSTLSGPEPPQMQYLRKLNQSSPRTSGATDEGGSGNYVKSQGATSQMPQQRHGFTKQQLHVLKAQILAFRRLKKGDGTLPQELLRSIVPPPLELQLQQPIHPSGGQNHDKSAGNIIPEHSRHIESEAKDLQHVPSVNGQGSSKQETFARDEKSTVSAVHMQAKPVAAKDPPPMLSSQKEEQQSFGCSVKSDQESERETNRNPVRNELPLDRGKASAPQPSASELMQNNNPTQTSTVGQPKAVGSTRKYHGPLFDFPFFTRKHDSFGSSMMVSNNNNLLLAYDVKHLLAEEGMEVLNKKRTENLKKIEGLLANNLEKKLIRPDLVLRLQIEEKKLRLRGLQARLRDDIDQQQQEIMSMPDRQYRKFVRLCERQRIELARQVQASQRAIREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSMPGDAAERYSVVSTFLTQTEEYLHKLGSKITAAKNQQEVEEAGKAAAAAARLQGLSEEEVRAAAACAGEEMMIRNRFMEMNAPKVGSSVSKYYSLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSVSCIFYVGGKDQRSKLFSQEVCALKFNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGLSQNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGMLPPKVSIVLRCRMSAIQSAIYDWVKSTGTLRLDPEDEKLKVQKNPVYQAKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKDFLVKSCGKLWILDRILIKLERTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSADSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQNREVKVIYMEAVVDKISSYQKEDELRSGGTVDMEEELVGKDLYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEVELFDQMDEELDWIEEMTGYDQVPKWLRVSTREVNATIAALSRRPSKNTLLGDVGVESSEMGSERRRGRPKGKKNLNYKELDDENEEFSEASSDERNEYSTHEDEGEIGEFEDDGLSVEDGAQPNDKDQLEDGPICDSGYVFPQSTENARNNLTAEGSGSPGTSSDSERLTQTISPSVSSQKFGSLSALDARPSSLSKRIVCLEEGEIAVSGDSHMDNQQSGSWIHDRDEGEDEQVLQPKVKRKRSLRVRPRLAMERPEEKYGGDMGSLHQGESSILSVRTDHRFQEQARTDPEEKSFGGSNASRHDQNESSLKVKRNLPSRRVATTSKFQASPKSSRLNCISTPEDGGHSRESWEGKPINSSGSLALSSKMPEIIQRRCKSVISKLQRRIDKEGQQIIPLLKDLWKRIESSGYTGGSGNSFLDLRKIDQRIDRLEYSGVMELVFDVQFMLKSAMHFYGFSHEVRSEAKKVHDLFFDILKIAFPDTDFREARNALPFSGQISASAVTSPRKMAGNHTKRHRTINGVETDAGPSQKHLQRGFASSGENTRIKVHIPQKESKSGNGGGNSREHQQDDSPLLTHPGELVVCKKRRNDRDKSLAKSRTGSVGPVSPASVVPAARSPGLGSVPKDARLAIGQPSQQSNGSGGSVGWANPVKRLRSDSGKRRPSHL 2180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0047 2180 MobiDBLite consensus disorder prediction 264 319 - -
Lele38g0047 2180 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1281 1430 IPR001650 -
Lele38g0047 2180 SUPERFAMILY Bromodomain 1933 1992 IPR036427 GO:0005515
Lele38g0047 2180 FunFam ATP-dependent helicase BRM 751 825 - -
Lele38g0047 2180 Gene3D - 1190 1400 IPR027417 -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 264 295 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 1732 1751 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 1559 1700 - -
Lele38g0047 2180 Gene3D - 941 1189 IPR038718 -
Lele38g0047 2180 Coils Coil 700 720 - -
Lele38g0047 2180 ProSiteProfiles QLQ domain profile. 424 460 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele38g0047 2180 Gene3D - 752 825 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 1831 1854 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 349 425 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 2016 2180 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 1651 1700 - -
Lele38g0047 2180 FunFam Brahma1 1881 2004 - -
Lele38g0047 2180 Pfam Helicase conserved C-terminal domain 1279 1391 IPR001650 -
Lele38g0047 2180 Gene3D - 1881 2015 IPR036427 GO:0005515
Lele38g0047 2180 SMART helicmild6 1307 1391 IPR001650 -
Lele38g0047 2180 Pfam QLQ 425 458 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele38g0047 2180 SMART bromo_6 1879 1994 IPR001487 GO:0005515
Lele38g0047 2180 MobiDBLite consensus disorder prediction 1795 1871 - -
Lele38g0047 2180 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 962 1127 IPR014001 -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 546 560 - -
Lele38g0047 2180 SMART ultradead3 946 1135 IPR014001 -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 2037 2055 - -
Lele38g0047 2180 FunFam ATP-dependent helicase BRM 1190 1400 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 2145 2159 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 136 155 - -
Lele38g0047 2180 SMART QLQ_2 423 460 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele38g0047 2180 MobiDBLite consensus disorder prediction 1761 1776 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 162 182 - -
Lele38g0047 2180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1184 1521 IPR027417 -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 1615 1629 - -
Lele38g0047 2180 Pfam SNF2-related domain 953 1257 IPR000330 GO:0005524|GO:0140658
Lele38g0047 2180 CDD SF2_C_SNF 1276 1401 - -
Lele38g0047 2180 PANTHER SNF2/RAD54 HELICASE FAMILY 659 1741 - -
Lele38g0047 2180 CDD Bromodomain 1934 1989 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 346 425 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 590 612 - -
Lele38g0047 2180 Coils Coil 1588 1608 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 1721 1781 - -
Lele38g0047 2180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 934 1180 IPR027417 -
Lele38g0047 2180 FunFam ATP-dependent helicase BRM 941 1189 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 2095 2111 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 502 613 - -
Lele38g0047 2180 MobiDBLite consensus disorder prediction 561 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0047 Lele-ChrLele38 316600 326952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0047 971 1443 RAD5 or RAD16-like Gene Family AT1G02670 25.919 6.02e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele38g0047 SNF2_N 1.8e-64 CL0023