Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0019 ATGATGTTGTTCCTTGTTTTATTCCCAAAACTACTGTTCCCATGTTTGGTTCCTTTGGTAATTGATTGTCCTTCAAGCAGGATCTGGACAATGGGAAGAACACCCTGCTGCGACAAGAGGGGTTTGAAGAAAGGGCCCTGGACGGCTGAAGAGGACGAGCTCCTTGTAGATTACATCAAGAAGAATGGTGGCCATGGAAGCTGGCGTTCTCTCCCTAAGTTGGCAGGTCTGCTTCGGTGTGGGAAGAGTTGCAGGCTAAGGTGGACGAACTATCTAAGGCCTGATATAAAACGTGGTCCATTCAGCGTTGAGGAAGAGAAGCTTGTAATACAGCTTCATGGCATCCTTGGTAATAGGTGGGCGGCGATAGCTTCACAGCTACCAGGAAGAACAGACAATGAGATCAAGAATCTGTGGAACACTCACTTGAAGAAGCGAGTCTTGTGCATGGGACTCGACCCTCTCACCCACAAGCCTCTTTCTTCCTCTTCCTCTTCCTCTTCTGCTTCTAATCCCAACAAGCACCGCGCTGCTTCCTCCATCTCCACTCGCCACATGGCTCAGTGGGAGAGCGCCAGGCTCGAGGCCGAGGCTCGCCTCTCCAGAGAGACCTCTCTCTTCACCTCTCATGACTTGTTCCTCCGTCTCTGGAACTCCGACGTCGGCGACGCCTTCCGCAACATCGCCGTCTCCTCTCCGGGGTCCTATTCTTCCACCAAGTGCACCGTCACTACACCCTCTTTCTCCGTGCCAGCTCCAGCAACACGTGCTTTCATGCCTGCGTCTGACGACTCTTCGATCTCCAATGACCTGGAAGACTCCTCAGACACCGCGTTGCAGCTCTTGTTGGACTTCCCCATTTACAATGACATGAACTTCTTAGAGGCTAACTCTTTCATTTCTCCTCTTTAG 912 0.5175 MMLFLVLFPKLLFPCLVPLVIDCPSSRIWTMGRTPCCDKRGLKKGPWTAEEDELLVDYIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFSVEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRVLCMGLDPLTHKPLSSSSSSSSASNPNKHRAASSISTRHMAQWESARLEAEARLSRETSLFTSHDLFLRLWNSDVGDAFRNIAVSSPGSYSSTKCTVTTPSFSVPAPATRAFMPASDDSSISNDLEDSSDTALQLLLDFPIYNDMNFLEANSFISPL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0019 303 MobiDBLite consensus disorder prediction 159 184 - -
Lele38g0019 303 ProSiteProfiles Myb-like domain profile. 93 143 IPR001005 -
Lele38g0019 303 SUPERFAMILY Homeodomain-like 41 139 IPR009057 -
Lele38g0019 303 SMART sant 43 94 IPR001005 -
Lele38g0019 303 SMART sant 97 145 IPR001005 -
Lele38g0019 303 CDD SANT 100 143 IPR001005 -
Lele38g0019 303 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Lele38g0019 303 Pfam Myb-like DNA-binding domain 44 92 IPR001005 -
Lele38g0019 303 Gene3D - 100 147 - -
Lele38g0019 303 Gene3D - 41 98 - -
Lele38g0019 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 147 IPR017930 -
Lele38g0019 303 FunFam MYB transcription factor 100 147 - -
Lele38g0019 303 FunFam Myb transcription factor 41 98 - -
Lele38g0019 303 ProSiteProfiles Myb-like domain profile. 39 92 IPR001005 -
Lele38g0019 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 92 IPR017930 -
Lele38g0019 303 CDD SANT 46 92 IPR001005 -
Lele38g0019 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 31 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0019 Lele-ChrLele38 140059 143088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0019 31 297 MYB Transcription Factor Family AT3G61250 64.360 2.93e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele38g0019 Myb_DNA-binding 5.3e-14 CL0123