Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele38g0017 | ATGTCTTTCACTGGAACTTTGGACAAATGCAAGGCTTGCGACAAGACTGTCCATGTGGTGGACATGATGACCCTCGAAGGCACCCCTTACCATAAATCCTGCTTCAAGTGCAGCCACTGCAAGGGATTTCTCTCCATGAGCAGCTACTCCTGGATGGATGGCGTCCTCTACTGCAAGCCCCACTTTGAGCAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAGTCAGCGAGGTCCGCTGAGAAGAATGATCTGTCTAGGACTTCAAGCAAGCTGTCCTCCATGTTCAGTGGAACCCAGGACAAGTGCTCTGTGTGTGCCAAGACCGTGTATCCTCTGGAGAAGATGACGCTGGAAGGAGAGTGCTTCCACAAGTCGTGCTTCAGGTGTGCTCATGCAGGCTGCCCTCTCACCCACTCCTCCTACGCCGCCCTCGACGGCGTGCTCTACTGCAGGCACCACTTTGCTCAGCTCTTCATGGAGAAGGGAAATTACAACCATGTCCTCCAGGCTGCCGCCCATAAGCGCAGCGCCAGCGCTGGCACTCCTCCTCCTGAGCCTGCTACTGACGATGAGGCCAGCCCTCATCATGATGACAAGAAGGACGATGACAAGGATGACAAGGACGACCCCAAAGATTACCATGATGATGATAAAGAAGACCACTCTTAG | 678 | 0.531 | MSFTGTLDKCKACDKTVHVVDMMTLEGTPYHKSCFKCSHCKGFLSMSSYSWMDGVLYCKPHFEQLFKESGNFSKNFQSARSAEKNDLSRTSSKLSSMFSGTQDKCSVCAKTVYPLEKMTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAAHKRSASAGTPPPEPATDDEASPHHDDKKDDDKDDKDDPKDYHDDDKEDHS | 225 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele38g0017 | 225 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Lele38g0017 | 225 | FunFam | LIM domain and actin-binding 1 | 99 | 169 | - | - | |
| Lele38g0017 | 225 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Lele38g0017 | 225 | Pfam | LIM domain | 105 | 160 | IPR001781 | - | |
| Lele38g0017 | 225 | MobiDBLite | consensus disorder prediction | 192 | 225 | - | - | |
| Lele38g0017 | 225 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Lele38g0017 | 225 | SMART | lim_4 | 104 | 156 | IPR001781 | - | |
| Lele38g0017 | 225 | Gene3D | Cysteine Rich Protein | 99 | 169 | - | - | |
| Lele38g0017 | 225 | Gene3D | Cysteine Rich Protein | 6 | 74 | - | - | |
| Lele38g0017 | 225 | ProSiteProfiles | LIM domain profile. | 103 | 163 | IPR001781 | - | |
| Lele38g0017 | 225 | MobiDBLite | consensus disorder prediction | 176 | 225 | - | - | |
| Lele38g0017 | 225 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 97 | 130 | - | - | |
| Lele38g0017 | 225 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Lele38g0017 | 225 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Lele38g0017 | 225 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Lele38g0017 | 225 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Lele38g0017 | 225 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Lele38g0017 | 225 | PANTHER | OS06G0237300 PROTEIN | 6 | 84 | IPR045268 | - | |
| Lele38g0017 | 225 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 131 | 170 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele38g0017 | Lele-ChrLele38 | 131830 | 132875 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Lele38g0017 | LIM | 2.9e-10 | CL0167 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele38g0017 | 38 | 131830 | 132875 | Lele38g0017 | 38 | 131830 | 132875 | ECH |