Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0005 ATGTGGGAGACTCACATTTCCTATCTCAATGAAGTAGATGATTCTTCTCGGGCCAGCAGCACATATCTTGGTAAATTAAGGTCCAATTTTTTGGGAACCAAGTTTGCCATATGCGATAGCCAACCTCCCCAGAAAGCTAGCATTCAAGCGAATAATCATTCTAGTAGTAAATTCCACTCAAAGCAGGTATCTCCCAGAGTACCAGCACATAAATATAATGTTGCCTCCATCACTTTGAACTCAAAAGAGAGGTCCAAGAAGAATGGACTGCATTTTGAACTCTATACCTATGTCGGCTATTCAGGAAGTAAGCAGTTCCCCAACTCCAACAACTCTTCTGCAATTTTCTTCCTCACTAGCAGTGAAAGGAAAAGCTTCAACTATAGATTTAAACTCTGCAAACTTGCTAGATCCACTGGCATCGAGGCAGGGCTCAGTTGA 441 0.4195 MWETHISYLNEVDDSSRASSTYLGKLRSNFLGTKFAICDSQPPQKASIQANNHSSSKFHSKQVSPRVPAHKYNVASITLNSKERSKKNGLHFELYTYVGYSGSKQFPNSNNSSAIFFLTSSERKSFNYRFKLCKLARSTGIEAGLS 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0005 146 MobiDBLite consensus disorder prediction 45 66 - -
Lele38g0005 146 Pfam Tub family 12 83 IPR000007 -
Lele38g0005 146 SUPERFAMILY Tubby C-terminal domain-like 9 82 IPR025659 -
Lele38g0005 146 Gene3D Tubby Protein; Chain A 3 89 IPR025659 -
Lele38g0005 146 PRINTS Tubby superfamily signature 22 46 IPR000007 -
Lele38g0005 146 PRINTS Tubby superfamily signature 6 22 IPR000007 -
Lele38g0005 146 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0005 Lele-ChrLele38 39069 40274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0005 11 78 TUB Transcription Factor Family AT1G25280 54.930 3.50e-19 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele38g0005 Tub 9.5e-16 CL0395