Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1420 ATGAAGGTGATCCCTTGCGGACTTGACCACGAGACCAAGTCCTCGGGTGAGGATCTGGTAGGGCCCGTCCCTCCTCCTTCTCTACATTCTCAGTTTTCTTCGTCTAAAATTCATCGAATCTCAAAGGCTGGTCGCGTTCTTTCTCTTCCTAAGATGTCTGCAAATTCTGAGGGCACTTCATCTGCATTAAATCGGTCTAATTCTCAGGTTTTTGCGGACACTGCCCTGCTAGCTGACCATTCTACCCGGACTGCAGTATGCGCTCTCTGCCAAAAGGCCCTATCACCTGATATTGAGATAACAAATGATCTTGCACCCGTTGGTGTATGTGGTGATTGTAAATTTTTATTACTTGAAGATTTTGGGACCCTTTCCCAAAACCCTCAAAGAATGCATAGGGGAAGATCCAGGTACAGCAGTTCTGAATCAATTGAGAATGGTCAATCACATCAGCTCCCCAGTATGGCTAATTCTGTGAGACAAAATCAGTCCTCTGCATCTGTGGAGGATGATCAGCTTGTTGATGGTGATACCCCCTCTTGGTTATGGCAGTATGCTAGTACCCATACTACCCCTAGCGAGTCTCGAAGATGGAGGCGGGTTTTCTCTGACACTGATAGTGATGGTTATGATAATTGGAGTTCTCTTTATGGTGAGAATGAATCAAATGCGAGTATTAGGCGCTACAGAGTCCCCCATGGTGAGACTGATCCCTTCTCTTTCAGTGCTTATGGAGCTGACTCTGAAGTATCCATGGATAGATATAGTTTTGTAGGTACGGGAATCTTAAATTTACCAGATGAGGGAGATGAGTTTGATAGTGACGCTCATATAGATCCAATGCATGCTGGCCATAGCCATTGGAATTCTGATGATATGGAAGAGGAGGATGAGGATGACGAAGAGGAGGAAGAAGAGGAAGAGGAAAGAGAATGGGAAGTAGCTGAGGCTGAGGAAGCTGAAGCCACTGCCCACCTTCAAATATCTTTTACCTCAAGTCCAAGTGAGAGAAGTTACCCCATTAATTGGGGCCCACAGTTTCGTTTTCCTGAATCTGAGGAAATATTAAGTAGGAGAGTTAGGGATAGATTGCAAACTTACGCTGATCACAGCTCCAATTACTTGGAGGAGGCTCATTCACCTCCATATGGTGCAAATTTTGGGGATTATCTTGATGCTAGACAATTTGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAACTCAAGACGAGGAGCACCTCCTGCAGCAGTGTCTTTTGTACATAGTCTGCCCCGTATTGTTATAAGCAAAGAACACGAGAAGCATGATGATCTTGTATGCGCCATTTGCAAGGATGCCTTGGCCACAGGCATTGAAGTAAATCAACTTCCCTGCTTTCACCTTTATCATGCCGGCTGCATTTTACCATGGCTGACTGCACGAAATTCATGCCCCCTTTGTCGTTATGAGCTCCCGACAGATGATAAGGATTATGAGGAAGGAAAACGCAATATTGACATTAGAAATGAGCTCCATGAAGTGCAGCAGCTAGATGTAATGGATGGGAATTCTTCTGATGGAGCTGAAGCAAATGAAGAGGATGGTACTAATCAAGGTGGAGTACAGCAAAGTGAGCTTGTGAACATGGTTCCTGTAGATAACCCTTCTGCAGCGAGTGGCGGTAGAGGAAGGTGGTTTTTCTTTGCTGCTGCTCCAATTGTTAGTCTAGTGGGTATTGTTATTGTCTTACGGTTAGGCAACCCTCTAATTGAAAGTAGTGGACAATTCGGCTGCCACAACTTGCAGGGGCAAAATCAGCATCAGGTTCACGTTTCCTCCTCACCCAACCATAGGGAGGATAGAAGCAGAAGATGGTGGTCTGGTCTGCGTGATGTTCAGTTAGCGGAGTTTAAGCTGGAAATTTGCAAAGTTTTCCTTGCTTTAATTAGTCACATGCTTGTCCTCCTGTCAACTTTCCATGTTCTCACTGTTCTTATAAGTTTTGTGAATATGTATGAAGTTCAAAATGTTTTCATGGCATGA 2025 0.4464 MKVIPCGLDHETKSSGEDLVGPVPPPSLHSQFSSSKIHRISKAGRVLSLPKMSANSEGTSSALNRSNSQVFADTALLADHSTRTAVCALCQKALSPDIEITNDLAPVGVCGDCKFLLLEDFGTLSQNPQRMHRGRSRYSSSESIENGQSHQLPSMANSVRQNQSSASVEDDQLVDGDTPSWLWQYASTHTTPSESRRWRRVFSDTDSDGYDNWSSLYGENESNASIRRYRVPHGETDPFSFSAYGADSEVSMDRYSFVGTGILNLPDEGDEFDSDAHIDPMHAGHSHWNSDDMEEEDEDDEEEEEEEEEREWEVAEAEEAEATAHLQISFTSSPSERSYPINWGPQFRFPESEEILSRRVRDRLQTYADHSSNYLEEAHSPPYGANFGDYLDARQFEDLLEHLAENDNSRRGAPPAAVSFVHSLPRIVISKEHEKHDDLVCAICKDALATGIEVNQLPCFHLYHAGCILPWLTARNSCPLCRYELPTDDKDYEEGKRNIDIRNELHEVQQLDVMDGNSSDGAEANEEDGTNQGGVQQSELVNMVPVDNPSAASGGRGRWFFFAAAPIVSLVGIVIVLRLGNPLIESSGQFGCHNLQGQNQHQVHVSSSPNHREDRSRRWWSGLRDVQLAEFKLEICKVFLALISHMLVLLSTFHVLTVLISFVNMYEVQNVFMA 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1420 674 MobiDBLite consensus disorder prediction 268 313 - -
Lele37g1420 674 Pfam Ring finger domain 441 482 IPR001841 -
Lele37g1420 674 MobiDBLite consensus disorder prediction 1 23 - -
Lele37g1420 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 488 IPR013083 -
Lele37g1420 674 MobiDBLite consensus disorder prediction 275 291 - -
Lele37g1420 674 ProSiteProfiles Zinc finger RING-type profile. 441 482 IPR001841 -
Lele37g1420 674 Coils Coil 290 323 - -
Lele37g1420 674 MobiDBLite consensus disorder prediction 126 171 - -
Lele37g1420 674 MobiDBLite consensus disorder prediction 292 313 - -
Lele37g1420 674 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 294 486 - -
Lele37g1420 674 SUPERFAMILY RING/U-box 424 489 - -
Lele37g1420 674 MobiDBLite consensus disorder prediction 126 172 - -
Lele37g1420 674 FunFam E3 ubiquitin-protein ligase RING1-like 402 488 - -
Lele37g1420 674 SMART ring_2 441 481 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1420 Lele-ChrLele37 22881121 22885411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1420 77 619 C3H Transcription Factor Family AT5G01980 40.180 5.07e-114 350