LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele37g1382	ATGGATTCCTCCTCTTCTCCCATGTCCTTCCACGGCCTTCCAGAAGCTTCCCCGAAGCCTCGCATGAAACGTCTCGTCACAACCTTAATGGAGGCAGCCACCCTTCGGACTCCTTCCTTCAAAGAAAACACCTACTTCATCTCCCACTTGAAATCCTCCGAGAAGAGGGCTCTTCAAGAGCTCAAAGGCAAGCTCAAAGCCTCTGATTCCTCTGAATGTTCCATGTGGGGCGTTTCCCTTGGAGGTGACGAAAGAGCTGATGTCGTTCTCTTGAAATTTCTGAGAGCCAGAGACTTCAGAGTCGGAGACGCTCTCAACATGCTTCTGAAATGCTTGGCTTGGAGAAAGGAGTTCGGAGCAGACAACGTCGTTGATGAGGACTTGGGCTTCAAAGAGCTCGAAGGAGTTACAGCCTACATGCACGGGTATGACAGGGAGGGCTACCCTGTGTGCTACAATGCTTATGGGGTTTTCAAAGATAAAGAAATGTACGAAAGAATATTTGCTGATGAAGAGAAGCTTAAGAAATTTCTGAGATGGAGAGTTCAAGTTCTGGAGAGAGGCATTAAGCTTCTTCAGTTCAAGCCTGGTGGGGTCAACTCCATTATTCAAGTTACTGACCTTAAGGACATGCCTAATAGAGAGCTTAGATTGGCCTCTAATCAGATCCTCAATCTGTTCCAAGACAATTACCCAGAAATGGTGGCTCGTAAGATTTTCATCAATGTCCCGTGGTATTTCAGCCTGTTGTATTCAATGTTCAGTCCTTTTCTGACCCAACGAACTAAGAGCAAGTTCGTGATCTCTAAGGAAGGAAATGCCGCGGAGACGCTCTACAAATTTATAAGGCCGGAGGATATTCCAGTTCAGTACGGAGGACTGTGCAGACCCATTGATTTGCAGAATGGTCACCCGAAACCTGCTTCTGAGTTCACTGTAAAAGGAGGGGAGAAAGTGAACATACAAATTGAAGGAATTGAGGCAGGAGCAACAATAACATGGGACATAGTGGTGGGAGGGTGGGAGTTAGAGTACAGTGCAGAGTTTGTGCCAAGTGGAGAGGGAAGGTACATAATAGGAGTGGAAAAGGCGAGGAAGATGGGGGCATCAGAAGAAGCAATACACAATTCATTCACAGCAAGAGAGGCAGGCAAGTTGGTTCTGTCTGTGGATAACGGTTGCTCTCGCAGGAAGAAAGTTGCAGCTTATCGCTATATCGTGCGCAAATCCAACTGA	1236	0.4693	MDSSSSPMSFHGLPEASPKPRMKRLVTTLMEAATLRTPSFKENTYFISHLKSSEKRALQELKGKLKASDSSECSMWGVSLGGDERADVVLLKFLRARDFRVGDALNMLLKCLAWRKEFGADNVVDEDLGFKELEGVTAYMHGYDREGYPVCYNAYGVFKDKEMYERIFADEEKLKKFLRWRVQVLERGIKLLQFKPGGVNSIIQVTDLKDMPNRELRLASNQILNLFQDNYPEMVARKIFINVPWYFSLLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPEDIPVQYGGLCRPIDLQNGHPKPASEFTVKGGEKVNIQIEGIEAGATITWDIVVGGWELEYSAEFVPSGEGRYIIGVEKARKMGASEEAIHNSFTAREAGKLVLSVDNGCSRRKKVAAYRYIVRKSN	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele37g1382	411	FunFam	SEC14 cytosolic factor family protein	46	117	-	-
	Lele37g1382	411	Pfam	CRAL/TRIO, N-terminal domain	57	109	IPR011074	-
	Lele37g1382	411	SMART	sec14_4	132	296	IPR001251	-
	Lele37g1382	411	ProSiteProfiles	CRAL-TRIO lipid binding domain profile.	140	299	IPR001251	-
	Lele37g1382	411	SUPERFAMILY	Supernatant protein factor (SPF), C-terminal domain	310	408	IPR036598	-
	Lele37g1382	411	CDD	SEC14	130	294	IPR001251	-
	Lele37g1382	411	Gene3D	-	47	117	-	-
	Lele37g1382	411	SMART	CRAL_TRIO_N_2	86	111	IPR011074	-
	Lele37g1382	411	Pfam	CRAL/TRIO domain	134	293	IPR001251	-
	Lele37g1382	411	SUPERFAMILY	CRAL/TRIO domain	131	298	IPR036865	-
	Lele37g1382	411	SUPERFAMILY	CRAL/TRIO N-terminal domain	43	126	IPR036273	-
	Lele37g1382	411	ProSiteProfiles	GOLD domain profile.	275	409	IPR009038	-
	Lele37g1382	411	Gene3D	-	121	305	IPR036865	-
	Lele37g1382	411	PANTHER	PATELLIN-1	34	410	IPR044834	GO:0008289
	Lele37g1382	411	Gene3D	GOLD domain	306	407	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele37g1382	Lele-ChrLele37	22615163	22617589	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele37g1382	90	288	Acyl Lipid Metabolism Gene Families	AT1G55840	29.952	4.19e-13	67.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele42g0201	42	1651002	1653123	Lele37g1382	37	22615163	22617589	CCT
	Lele43g1155	43	19937091	19939176	Lele37g1382	37	22615163	22617589	CCT
	Lele44g1145	44	20087917	20089996	Lele37g1382	37	22615163	22617589	CCT
	Lele41g0206	41	1656464	1659287	Lele37g1382	37	22615163	22617589	CCT
	Lele37g1382	37	22615163	22617589	Lele39g0042	39	313153	318496	hybridization
	Lele37g1382	37	22615163	22617589	Lele40g1200	40	21877727	21879642	hybridization