Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1369 ATGTTCATTGTAATACTGCGGGCTAGGGGTTTGAAGAAGCACCTGAAGAGGCTCAATGCGCCCAAGCACTGGATGCTTGATAAGCTTGGCGGAGCCTTTGCACCTAAGCCATCTTCTGGACCCCACAAGTCAAGGGAATGTTTGCCTCTTATCCTTATACTGCGAAACAGATTGAAATATGCTCTCACATATAGAGAAGTCATTTCCATCTTGATGCAGCGCCATGTTCTTGTTGATGGCAAGGTTAGGACAGACAAGACATACCCGGCTGGTTTCATGGATGTTGTATCTATTCCAAAGACCAATGAGAACTTCCGGCTTCTCTATGACACAAAGGGCCGTTTCCGTCTCCAATCGTTAAGGGATGAAGAGGCAAAGTTTAAGCTTTGCAAGGTTCGATCTGTTCAGTTTGGACAGAAGGGCATCCCATATCTGAACACCTATGATGGGCGCACCATCCGATATCCAGATCCATTGATAAAGTCAAATGACACCATTAAGCTGGATCTGGAATCCAACAAGATCACCGACTTCATCAAATTCGATGTTGGCAATGTTGTCATGGTGACTGGAGGAAGGAATAGAGGGCGTGTTGGTGTCATCAAGAACAGAGAAAAGCACAAGGGAAGCTTTGAAACCATCCACGTCCAGGATGCTACTGGGCACGAGTTCGCTACTCGTATGGGTAATGTGTTCATTATCGGTAAAGGGACAAAGCCTTGGGTGTCTCTTCCCAAGGGCCGTGGTATCAAGTTGTCTATCATCGAGGAGGCTAGAAAGAGACTCGCTGCTCAACTCGAGACAGCTGCTTAA 813 0.4674 MFIVILRARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLQSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKSNDTIKLDLESNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFIIGKGTKPWVSLPKGRGIKLSIIEEARKRLAAQLETAA 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1369 270 Coils Coil 252 270 - -
Lele37g1369 270 Gene3D - 181 251 IPR014722 -
Lele37g1369 270 SMART kow_9 180 207 IPR005824 -
Lele37g1369 270 Pfam 40S ribosomal protein S4 C-terminus 218 265 IPR032277 -
Lele37g1369 270 Gene3D - 7 123 IPR036986 GO:0003723
Lele37g1369 270 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 8 260 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lele37g1369 270 PIRSF RPS4a_RPS4e 7 247 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lele37g1369 270 ProSitePatterns Ribosomal protein S4e signature. 14 28 IPR018199 -
Lele37g1369 270 CDD KOW_RPS4 181 235 IPR041982 -
Lele37g1369 270 Gene3D - 128 178 IPR038237 -
Lele37g1369 270 FunFam 40S ribosomal protein S4 7 123 - -
Lele37g1369 270 Pfam KOW motif 183 216 IPR005824 -
Lele37g1369 270 FunFam 40S ribosomal protein S4 181 251 - -
Lele37g1369 270 ProSiteProfiles S4 RNA-binding domain profile. 48 110 - -
Lele37g1369 270 FunFam 40S ribosomal protein S4 128 178 - -
Lele37g1369 270 Pfam Ribosomal family S4e 101 175 IPR013845 -
Lele37g1369 270 CDD S4 57 117 - -
Lele37g1369 270 Pfam RS4NT (NUC023) domain 9 45 IPR013843 -
Lele37g1369 270 SMART s4_6 48 112 IPR002942 GO:0003723
Lele37g1369 270 Hamap 30S ribosomal protein S4e [rps4e]. 13 244 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lele37g1369 270 Pfam S4 domain 53 96 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1369 Lele-ChrLele37 22552868 22554315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1369 8 265 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 92.248 0.0 505