Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1351 ATGGACGTCGACGGAACTTCTAAACCCAAAGAGGAAAAGCTCTTACTGGTCATGTTAGTGGGAGCACCAGGGAGCGGCAAGTCCACCTTCTGCGAAGAAGTTATGCGTTCTTCTACTCGTCCTTGGGTTCGCGTTTGCCAGGATATCATTAAAAATGGGAAAGCAGGAAATAAAGCTCAGTGTCTAAGCAGTGCAGCTGGAGCATTGAAGGATGAAAAGAATGCATTTATTGACAGGTGCAATCTTGATAGAGAACAGCGTTCAGGATTCGCAGAGCTTGGTGGACCCCAAGTAGATGTGCATGCTGTTGTGCTTGATCTTCCTGCAAAGCTTTGTATTTCTCGATCTGTTAAACGATCTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCGGCTGCAGTGGTGAATAGAATGCTTCAGAAGAAAGAGCTGCCTACGTTAAGTGAAGGGTTTAACCGGATAACATTTTGTCAGACTGAGAGTGATGTCAAAGTGGCTCTTAACACATACAATGCACTTGGGCCACTGGATAACCTTCCACATGGATGTTTTGGCCAGAAAAGTAAAGATCCCAAAGTTCAATTGGATATAATGAAGTTCTTCAAAAAGGCTGAGGTCCCAGTTGTTGCTGAGTCTAGAGAGAATTGCGGTGGCAATTCTACTTCTCAAAGCAATGTGATGATAGATCCCTGTCGTAAAGATATGGAAATTTTTTCATCAAATTCAGATAAAGCCAACATAGAGCCAATGAATGTGGAAAACATCTCAGTTGGCTCCACTGTTTCTCATGTTGATCATGCTTTCTTGCGTGATGCTCCCACTCTGGCATTTCCATCTATTTCAACATCTGATTTCAAGTTTGACCATGAGAAGGCAGCTGAGATTATTGTGGAGAAAGTTGCAGAGTTCTCTAATAAGCTTGCAAATGCTAGATTTGTTTTAGTTGACTTGACTCATGGTTCAAAGATTCTGTCTTTAGTCAAAACCATAGCTGCTAAAAAGACTTTAGACCCCAGAAAGTTTTTTACCCATGTTGGGGACATTACTTGCCTTAAGTCCACTGGAGGCTTGCACTGTGCTGTGATAGCTAATGCTGCCAATTGGCGATTGAAACCTGGAGGTGGAGGGGTTAATGCTGCAATTTTCAAGGCTGCGGGTCCTGTCTTGGAGTCTGCAACCAAAGAACGAGCACAATTGCTTTTGCCTGGGAATGCTGTTGCTGTCCCTCTACCATCATCTTCTCCTTTGTTTGCTAGGGAGGGGGTAACCCATGTAATACATGTTCTTGGACCAAATATGAACCCACAGAGGCCAGAATGTCTCAATAATGATTACAATAAAGGCTGCAAGATTCTCAGAGAGGCTTACACTTCACTATTTGAAGCTTTTGCATCAATCGTGAGGACTGCAACAGAGCAAAAGAGCAAGAGAGATGCTGATGATGGATCTGAAAAAAGCAAGAAATACAAGGGAAGTCAGGATGATGTTGAAGTGAACCGTACTGGTACCAAAGTTGTAAAGACAGATTCAAGTAATAAAAAAAGTGATGGCAGCTTGAACAAGACATGGGGATCGTGGGCTCAAGCTCTTCATCAAATAGCTATGCATCCGGAGAAGCATAAGGATGAATTGCTTGAAATATCCGAAGATGTAGTTGTGCTGAATGATCTGTATCCTAAGGCACAGAAGCACGTTTTGGTGTTGGCGCGAACTAGAGGCCTCGATTGCCTGGCTGATGTTCAAAACAACCACCTTCACTTGCTAAAGAGGATGCATGCTGTGGGTCTAAAATGGGCCGAGAAGTTCTTACATGAGAATGCTTCATTAGTCTTTCGTCTTGGATATCACTCGGTTCAATCAATGCGACAACTTCATTTACATGTTATTAGCCAGGACTTTGACTCAAAACATTTGAAGAACAAGAAGCACTGGAACTCGTTCAACACCGATTTCTTTCGTGACTCAGTAGATGTTATTGATGAGGTCTCTAATAATGGGAAATTAACCTTGAGAGATGATGACAAGTTGCTGTCCATGGAGTTGAGGTGCCATAGATGTAGAAGTGCACATCCTAACATTCCCAGGTTAAAATCTCATATTAGCAGCTGCCAAGCTCCTTTTCCTGCTTGCTTGCTTCAAAATGGTCGTTTGGTTCGTGCACAACGTGAAGAGTCTATCAAATGTGAGGAGTTAATCTCTGATGGTTTTGACAGTTCAAGCAGTATTTTTAGTCTCCAATATCTTCAGGTGTTGAGTTTGGCTTCTAAAATTTTTGTTTCTGAGATTTCGAGGACAGAACTGAAACTCAAGAATCCAAATTTGAGAATGCTTACTAAGAATCTCACCAGCATTAGGCAATTGTATCTAGATGGTGTCACTATATCAACTCAGGGACCAGAATGGGGCAATGCTCTGTCATCTCTCCCTAGTCTACAAGAATTGAGAATGTCAGACAGCAATCTTTCAGGTCCCATTGATTCTTCCCTTACTAGACTAAAGCTCCTATCGCTGTTGCGGGTTGAGTGGAAGTTTTCCACAAAATATCTTCCGGGTAAAGACATTGACATATCTTATAATACTGGTCTTAGTGGTTCCTTTCCGAATTTCCCAGTGAATGGATCTCTCCAAGCCCTTGTGGTGAGCCGCACAAATTTTTCCGGAGGGCTACCAGATTCAATAAGTAACTTGAGAAACTTATCCACGTTGGATCTTTCAAATTCTCAATTTTCTGGATTCCTTCCAAATTCCATCTCAAAACTCAACCAGCTCACTTTTCTGGATTCCTTCCAAATTCCAAGTTGTCATTTAACATCTTCAGAGGTTCAATCCCATCATTTGGTACAGCAAAAGAAGCTCACTAACGTGGACCTTTCTAATAATATTTTAGGTGGCGATATTTCATCATCTGGTCAATTTGAGGGACTACAACATCTAGCCAGTATTAACTTGCGTAATAATTCCATCAATGGCAGCATTCCTTCCTCTCTTTTTATGCTTCCATCCCTGCGAAGCATTCAGCTTTCCGACAACCACTTCAGTGAATTGGATGATGAGTTCTCAATTGTCTCTTCCTCCAGATTAAATACCCTCAATTTGAGAAGCAATTTATCAGGTCCCATTCCAGGGTCTATCTTCCAAGTCAAAGGACTTAGTATTCTCCAACTTTCCTCAAACAAGTTCAATGGGTCAATGCTGCTAGATATGCTTAATCCGAGTCCCAGTTTGACGCTCCTGGACCTTCATGACAATCAACTCCGAGGCATCCCTGATTCCTTCTGCAAATTTCTGAATCTTCGAGTGCTTGATGTTTCTCACAATAACATTTCCGGTGCAATTCCCCCGTGTTTTATGGCAATGAATGGAACCCTTGCCACTTTGCGGGAAAACAATCTCACAGGAAAAATACCTGACAAGTTTCCAGCTTCTTGTGCTTTAAGGACTCTAGATGTCAATGGAAATCAATTAGATGGACCAATACCAAAGTCTATTGCTAATTGCATGACATTGGAGGTTCACAACCTTGGAAACAATGGTATTATTGATGGATTTCCACGTTCATTGAAGAAAATTTCCACGCTTCGTGTCATGGTCTTGCGACAAAACAAATCCCATGGATCCAGGATGCCCTAA 3630 0.4204 MDVDGTSKPKEEKLLLVMLVGAPGSGKSTFCEEVMRSSTRPWVRVCQDIIKNGKAGNKAQCLSSAAGALKDEKNAFIDRCNLDREQRSGFAELGGPQVDVHAVVLDLPAKLCISRSVKRSGHEGNLQGGKAAAVVNRMLQKKELPTLSEGFNRITFCQTESDVKVALNTYNALGPLDNLPHGCFGQKSKDPKVQLDIMKFFKKAEVPVVAESRENCGGNSTSQSNVMIDPCRKDMEIFSSNSDKANIEPMNVENISVGSTVSHVDHAFLRDAPTLAFPSISTSDFKFDHEKAAEIIVEKVAEFSNKLANARFVLVDLTHGSKILSLVKTIAAKKTLDPRKFFTHVGDITCLKSTGGLHCAVIANAANWRLKPGGGGVNAAIFKAAGPVLESATKERAQLLLPGNAVAVPLPSSSPLFAREGVTHVIHVLGPNMNPQRPECLNNDYNKGCKILREAYTSLFEAFASIVRTATEQKSKRDADDGSEKSKKYKGSQDDVEVNRTGTKVVKTDSSNKKSDGSLNKTWGSWAQALHQIAMHPEKHKDELLEISEDVVVLNDLYPKAQKHVLVLARTRGLDCLADVQNNHLHLLKRMHAVGLKWAEKFLHENASLVFRLGYHSVQSMRQLHLHVISQDFDSKHLKNKKHWNSFNTDFFRDSVDVIDEVSNNGKLTLRDDDKLLSMELRCHRCRSAHPNIPRLKSHISSCQAPFPACLLQNGRLVRAQREESIKCEELISDGFDSSSSIFSLQYLQVLSLASKIFVSEISRTELKLKNPNLRMLTKNLTSIRQLYLDGVTISTQGPEWGNALSSLPSLQELRMSDSNLSGPIDSSLTRLKLLSLLRVEWKFSTKYLPGKDIDISYNTGLSGSFPNFPVNGSLQALVVSRTNFSGGLPDSISNLRNLSTLDLSNSQFSGFLPNSISKLNQLTFLDSFQIPSCHLTSSEVQSHHLVQQKKLTNVDLSNNILGGDISSSGQFEGLQHLASINLRNNSINGSIPSSLFMLPSLRSIQLSDNHFSELDDEFSIVSSSRLNTLNLRSNLSGPIPGSIFQVKGLSILQLSSNKFNGSMLLDMLNPSPSLTLLDLHDNQLRGIPDSFCKFLNLRVLDVSHNNISGAIPPCFMAMNGTLATLRENNLTGKIPDKFPASCALRTLDVNGNQLDGPIPKSIANCMTLEVHNLGNNGIIDGFPRSLKKISTLRVMVLRQNKSHGSRMP 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1351 1209 FunFam Transcription factor bHLH140 321 468 - -
Lele37g1351 1209 Gene3D Ribonuclease Inhibitor 702 849 IPR032675 -
Lele37g1351 1209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 159 IPR027417 -
Lele37g1351 1209 Pfam C2HE / C2H2 / C2HC zinc-binding finger 648 701 IPR032566 -
Lele37g1351 1209 Gene3D Leucine Aminopeptidase, subunit E, domain 1 320 467 IPR043472 -
Lele37g1351 1209 ProSitePatterns HIT domain signature. 612 630 IPR019808 -
Lele37g1351 1209 Pfam AAA domain 16 141 - -
Lele37g1351 1209 SUPERFAMILY L domain-like 854 1119 - -
Lele37g1351 1209 Gene3D - 4 171 IPR027417 -
Lele37g1351 1209 MobiDBLite consensus disorder prediction 471 519 - -
Lele37g1351 1209 ProSiteProfiles Macro domain profile. 328 566 IPR002589 -
Lele37g1351 1209 Gene3D Ribonuclease Inhibitor 928 1017 IPR032675 -
Lele37g1351 1209 Pfam Leucine Rich Repeat 1145 1166 IPR001611 GO:0005515
Lele37g1351 1209 Pfam Leucine Rich Repeat 1097 1116 IPR001611 GO:0005515
Lele37g1351 1209 Pfam Leucine Rich Repeat 898 920 IPR001611 GO:0005515
Lele37g1351 1209 Pfam Macro domain 363 445 IPR002589 -
Lele37g1351 1209 SUPERFAMILY HIT-like 520 687 IPR036265 -
Lele37g1351 1209 SUPERFAMILY L domain-like 740 842 - -
Lele37g1351 1209 Gene3D Ribonuclease Inhibitor 1018 1208 IPR032675 -
Lele37g1351 1209 SUPERFAMILY Macro domain-like 264 316 IPR043472 -
Lele37g1351 1209 SUPERFAMILY L domain-like 1067 1202 - -
Lele37g1351 1209 SUPERFAMILY Macro domain-like 322 461 IPR043472 -
Lele37g1351 1209 Gene3D - 525 701 IPR036265 -
Lele37g1351 1209 Gene3D Ribonuclease Inhibitor 850 924 IPR032675 -
Lele37g1351 1209 SMART LRR_typ_2 896 919 IPR003591 -
Lele37g1351 1209 SMART LRR_typ_2 1073 1094 IPR003591 -
Lele37g1351 1209 SMART LRR_typ_2 999 1021 IPR003591 -
Lele37g1351 1209 SMART LRR_typ_2 1095 1118 IPR003591 -
Lele37g1351 1209 Pfam Leucine rich repeat 951 1012 IPR001611 GO:0005515
Lele37g1351 1209 MobiDBLite consensus disorder prediction 471 511 - -
Lele37g1351 1209 FunFam aprataxin isoform X2 524 704 - -
Lele37g1351 1209 FunFam Transcription factor bHLH140 4 172 - -
Lele37g1351 1209 PANTHER APRATAXIN-RELATED 275 703 - -
Lele37g1351 1209 Gene3D Leucine Aminopeptidase, subunit E, domain 1 261 319 IPR043472 -
Lele37g1351 1209 SMART YBR022w_8 340 479 IPR002589 -
Lele37g1351 1209 Pfam Scavenger mRNA decapping enzyme C-term binding 531 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1351 Lele-ChrLele37 22450460 22457623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1351 13 721 C2H2 Transcription Factor Family AT5G01310 59.778 0.0 861