Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1313 ATGTCTGTTCTATCTCTTCATCGTGTTATGGAAATGGCTTATAGTCCTCGCACCGTGGAGGAGATCTTCAAGGATTATAGTGCTCGAAGAGCAGGAGTTGTTCGTGCTTTAACTCAAGATGTTGATGAATTTTATGGGCTCTGTGATCCAGATAAGGAGAACTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCTGAGCTTCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGCACCGCAGGGACTGGCTTTCTCTGGTTGCTGTCCACAGTGATTCATGGTTGCTTTCGGTGGCTTTTTATCTTGGAGCCCGTCTTAACCGCAATGAAAGGAAACGGTTATTCAGCTTGATCAATGATCTTCCCACTGTTTTTGAAGTTGTGACTGAGAGGAAACCATTAAAGGACAAGCCCACTGTGGACAGTGGCAGCAAATCCCGGGGCAGTACCAAGAGATCGAGTGATGGGCAAGTGAAAAGCAACCCAAAGTTTGCCGATGAAGGTTACGAGGAGGATGAGGATGAGCATAGCGAAACCCTTTGTGGTAGCTGTGGTGGGAATTACAATGCAGATGAATTTTGGATTGGGTGTGATATCTGCGAGAGATGGTTCCACGGGAAATGTGTGAAAATTACTCCTGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCATGTAGCATGAGGCGAGACGATATACGAAATTGA 753 0.4595 MSVLSLHRVMEMAYSPRTVEEIFKDYSARRAGVVRALTQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMHRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPLKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSMRRDDIRN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1313 250 CDD PHD_AL_plant 194 244 IPR044104 -
Lele37g1313 250 SMART PHD_3 194 242 IPR001965 -
Lele37g1313 250 FunFam PHD finger alfin-like protein 187 243 - -
Lele37g1313 250 Pfam Alfin 18 143 IPR021998 GO:0006355|GO:0042393
Lele37g1313 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 242 IPR013083 -
Lele37g1313 250 ProSiteProfiles Zinc finger PHD-type profile. 192 244 IPR019787 -
Lele37g1313 250 PANTHER CPG BINDING PROTEIN 15 245 IPR045104 GO:0006355|GO:0042393
Lele37g1313 250 MobiDBLite consensus disorder prediction 149 185 - -
Lele37g1313 250 SUPERFAMILY FYVE/PHD zinc finger 183 246 IPR011011 -
Lele37g1313 250 ProSitePatterns Zinc finger PHD-type signature. 195 241 IPR019786 -
Lele37g1313 250 MobiDBLite consensus disorder prediction 157 174 - -
Lele37g1313 250 Pfam PHD-finger 195 242 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1313 Lele-ChrLele37 22194043 22197901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1313 15 245 Alfin-like Transcription Factor Family AT5G05610 77.586 1.85e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele37g1313 Alfin 1.6e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0039 42 276644 293293 Lele37g1313 37 22194043 22197901 CCT
Lele43g1321 43 21308493 21325354 Lele37g1313 37 22194043 22197901 CCT
Lele44g1313 44 21360687 21380157 Lele37g1313 37 22194043 22197901 CCT
Lele37g1313 37 22194043 22197901 Lele39g0099 39 674188 677155 hybridization
Lele37g1313 37 22194043 22197901 Lele40g1147 40 21528300 21535580 hybridization