LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele37g1289	ATGCATATACAAGGGTTGTTAATGATACTACTGTCTATTAGAGACTGGAAGAGAGCAATGATTGGAGATTGCTTCGGTGCCTTTAATTGGTGTAAACCTAAACGGAGGAATTATACTGATGATCAATCACGCGAACAAGTGATATCAACCAAAAAATTTAGTTATAATTCTTTGAGATCTGCAACAGGAGACTTTCATCCATCCAACAGAATTGGTAGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTACGGGATGGAACTCAAGTTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAAGGAGCAAGAGAATTTATGACAGAAATTGATATGATATCAAATATAAGACATCCAAACCTTGTGCAACTTGTTGGCTGCTGCGTAGAGGACAACCATCGAATATTGGTCTACGAATTTCTAGAAAACAATAGCCTTGCAAGCTCTTTGCTGGGTTCCAAAAGTAAATATGTTGCTCTAGATTGGCCAAAAAGGGCTTCTATTTGCCGTGGTACCGCATCTGCTCTCGCGTTTCTTCATGATGAGGTTCAGCCAAATATTGTTCATAGAGATATTAAGGCTAGCAACATACTACTTGATGGAAACTTCAATCCCAAAATAGGAGACTTTGGCCTCGCGAAACTTTTTCCTGACAATGTCACCCATCTGAGTACTCGAGTGGCTGGAACTGAGGGATATCTTGCACCAGAATATGCACTTCTAGGACAGCTAACAAAAAAAGCTGATGTGTACAGTTTTGGCGTTCTCATGCTCGAAGTAATCAGCGGTAAAAGTAGCAGCAAAGCTGCATTTGGAGATAAGCTATTGGTTCTTGTGGAATGGATATGGAAGCTGAAAGAAGAAAATAGGCTTCTGAACATTGTTGATCCAGAACTAACTTCATATGACGAGGTTGAGGTCATGCGTTTCATTAAGGTTGCTCTGTTTTGTACGCAAGAAGTTGTTCATCATAGACCGACCATGAAGCAAGTTGCAGAAATGCTCTCCAAGGAGGTTCACCTTAATGACAAGGCTTTGACGCAACCTAGAGTTCATAGTTGGCACCGTACCTCCTGA	1077	0.4085	MHIQGLLMILLSIRDWKRAMIGDCFGAFNWCKPKRRNYTDDQSREQVISTKKFSYNSLRSATGDFHPSNRIGRGGYGVVYKGVLRDGTQVAIKSLSVESKQGAREFMTEIDMISNIRHPNLVQLVGCCVEDNHRILVYEFLENNSLASSLLGSKSKYVALDWPKRASICRGTASALAFLHDEVQPNIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDNVTHLSTRVAGTEGYLAPEYALLGQLTKKADVYSFGVLMLEVISGKSSSKAAFGDKLLVLVEWIWKLKEENRLLNIVDPELTSYDEVEVMRFIKVALFCTQEVVHHRPTMKQVAEMLSKEVHLNDKALTQPRVHSWHRTS	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele37g1289	358	FunFam	cold-responsive protein kinase 1	35	140	-	-
	Lele37g1289	358	Pfam	Protein kinase domain	66	332	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele37g1289	358	SUPERFAMILY	Protein kinase-like (PK-like)	42	335	IPR011009	-
	Lele37g1289	358	CDD	STKc_IRAK	71	337	-	-
	Lele37g1289	358	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	141	347	-	-
	Lele37g1289	358	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	49	353	-	-
	Lele37g1289	358	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	187	199	IPR008271	GO:0004672\|GO:0006468
	Lele37g1289	358	Gene3D	Transferase(Phosphotransferase) domain 1	141	351	-	-
	Lele37g1289	358	SMART	serkin_6	65	335	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele37g1289	358	ProSitePatterns	Protein kinases ATP-binding region signature.	71	93	IPR017441	GO:0005524
	Lele37g1289	358	ProSiteProfiles	Protein kinase domain profile.	65	341	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele37g1289	358	Gene3D	Phosphorylase Kinase; domain 1	29	140	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele37g1289	Lele-ChrLele37	22055333	22058571	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele37g1289	32	349	Receptor kinase-like Gene Family	AT1G56120	50.000	4.96e-103	321

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lele37g1289		Pkinase	5.4e-46	CL0016