Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1260 ATGCTTCAGATTCGGCTTAGTAAGGTTCAAGCCCCTGAAGGTTTAGCAGGGGTGAAGCCCTCACCTGTTGAGACTATTACAGTCACTTGTCCCGATCATCTAGTCCTTGCTGATCTTCCTGTAGCAAAGGGCATAGGTTCAGCCACTGCTACTTCATTGGTGAAGACTCTTGGTCGTAGATCTCGCCGCCAATGTGGTGACTGTGTCCATTTCTGTGTTTGTTGTGACTTCCCAATTGCGATCTATGGACGGCTGAGCCCTTGTGAGCATGCCTTCTGTCTTGATTGTGCTAGAAGTGATTCCATATGCTACCTGTGTGATGAACGAATCCAGAAAATTCAGACAATCAAAATGTTAGAAGGAATATTCATCTGTGCAGCTCCTCACTGTTTCAAGTCTTTCTTGAAAAAGTCAGAATTTGAAATGCATATCCAAGATGTACATGCTGACCTTCTCCGTCACAATGTAGACAAAGAAGATGGAAACGAGTCAGAGACACATAATAGCGTTTGGCAATCTGCAATGTCGGATTCTTCTGCTCACGCTTCCCAAAGGCCTGTTTTCTCTCCTGGTTCAAATTCCCAGCTACACGATCGAGAAGACAAGGCTGGTCAACAACCACTGAGAGACCAACCACCTTCAAGGCCGGCTCTGCAGCCAAAGCCACCTTTTGGTCAAGTTCAAAATCACTCTGCAGATCTCCAGCCTGGCTCTAATGGAGGTATTCCCCCGGGCTTCTATCAACAAAATTCTGACATGCAGCGACCTCCACAAGAACCTTCCCAGTTTACAGACCACCATCGAGGAGTCACACCAGAGACACCACTCCCTGATTATCCATCCATGCATTCCTCTCAGACACCCAGTTTCGCAGTGCCGGTTAATGCTAAACCAATGTTGAATCCTCCTGTGCCATTCGGTTATCCTCCTTACCCGCCACATGAGGGAGCTCCGCCATTTTATCCGAACCTGTATGATATGCGTCGGCAGGACTCGGCTTCTGAAGTAGGTGGAGACCAGAGTTCCTTACTTGGTTTTCTGCCAGGTGCCACAGCGGGCCCTAATTTTCCAGTAAATTATACCCAGCCCTTGAATGCAGGAACTGGTGGCTTACCTTTTGAACAAGGACATGGCGGTATGGCTATGGATCCACGTGATGCTAAAGGTATATTGGCACCACAGTCCATGCCCCTCCCACCTCCGCCTCCACTGCCATTGCTGCCCATGTCCCATCTGAACCAGAAATATTATTCCAGCGAGTTCGGACACAATGGACATGGTTATGGTTGGCAGCATGATAATCCTGAAGCCTTTGGTGGTCAGGACTAG 1329 0.4838 MLQIRLSKVQAPEGLAGVKPSPVETITVTCPDHLVLADLPVAKGIGSATATSLVKTLGRRSRRQCGDCVHFCVCCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDERIQKIQTIKMLEGIFICAAPHCFKSFLKKSEFEMHIQDVHADLLRHNVDKEDGNESETHNSVWQSAMSDSSAHASQRPVFSPGSNSQLHDREDKAGQQPLRDQPPSRPALQPKPPFGQVQNHSADLQPGSNGGIPPGFYQQNSDMQRPPQEPSQFTDHHRGVTPETPLPDYPSMHSSQTPSFAVPVNAKPMLNPPVPFGYPPYPPHEGAPPFYPNLYDMRRQDSASEVGGDQSSLLGFLPGATAGPNFPVNYTQPLNAGTGGLPFEQGHGGMAMDPRDAKGILAPQSMPLPPPPPLPLLPMSHLNQKYYSSEFGHNGHGYGWQHDNPEAFGGQD 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1260 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 123 IPR013083 -
Lele37g1260 442 MobiDBLite consensus disorder prediction 224 268 - -
Lele37g1260 442 MobiDBLite consensus disorder prediction 278 292 - -
Lele37g1260 442 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Lele37g1260 442 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Lele37g1260 442 MobiDBLite consensus disorder prediction 166 194 - -
Lele37g1260 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 149 IPR013087 -
Lele37g1260 442 MobiDBLite consensus disorder prediction 159 294 - -
Lele37g1260 442 MobiDBLite consensus disorder prediction 423 442 - -
Lele37g1260 442 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Lele37g1260 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 432 IPR040383 GO:0016567|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1260 Lele-ChrLele37 21824130 21826057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1260 1 439 C2H2 Transcription Factor Family AT5G01160 41.189 7.03e-94 285